PITA_69 megaCluster: 2 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_69 2 0.21 15 0 0.917789 0

Members

Displaying 1 - 35 of 35
100503596 predicted gene, 19789

Details for - - predicted gene, 19789

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503596

Tuberculist Genomic Region

108670 epithelial stromal interaction 1 (breast)

Details for - - epithelial stromal interaction 1 (breast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108670

Tuberculist Genomic Region

109082 F-box and WD-40 domain protein 17

Details for - - F-box and WD-40 domain protein 17

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109082

Tuberculist Genomic Region

109660 chymotrypsin-like

Details for - - chymotrypsin-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109660

Tuberculist Genomic Region

110751 a disintegrin and metallopeptidase domain 33

Details for RP23-228H14.4 - a disintegrin and metallopeptidase domain 33

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110751

Tuberculist Genomic Region

140559 immunoglobulin superfamily, member 8

Details for - - immunoglobulin superfamily, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140559

Tuberculist Genomic Region

17187 Max protein

Details for - - Max protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17187

Tuberculist Genomic Region

20471 sine oculis-related homeobox 1

Details for - - sine oculis-related homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20471

Tuberculist Genomic Region

20723 serine (or cysteine) peptidase inhibitor, clade B, member 9

Details for RP23-391I11.1 - serine (or cysteine) peptidase inhibitor, clade B, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20723

Tuberculist Genomic Region

208043 SET domain containing 1B

Details for - - SET domain containing 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208043

Tuberculist Genomic Region

209488 hematopoietic SH2 domain containing

Details for - - hematopoietic SH2 domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209488

Tuberculist Genomic Region

223672 apolipoprotein L 9a

Details for - - apolipoprotein L 9a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223672

Tuberculist Genomic Region

230088 family with sequence similarity 214, member B

Details for RP23-124L1.9 - family with sequence similarity 214, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230088

Tuberculist Genomic Region

237253 low density lipoprotein receptor-related protein 11

Details for - - low density lipoprotein receptor-related protein 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237253

Tuberculist Genomic Region

23797 thymoma viral proto-oncogene 3

Details for - - thymoma viral proto-oncogene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23797

Tuberculist Genomic Region

243813 leukocyte receptor cluster (LRC) member 9

Details for - - leukocyte receptor cluster (LRC) member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243813

Tuberculist Genomic Region

268749 ring finger protein 31

Details for - - ring finger protein 31

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268749

Tuberculist Genomic Region

56068 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1

Details for RP23-340M18.4 - Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56068

Tuberculist Genomic Region

56318 acid phosphatase, prostate

Details for 9.104100899-104272570.1 - acid phosphatase, prostate

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56318

Tuberculist Genomic Region

56380 AT rich interactive domain 3B (BRIGHT-like)

Details for - - AT rich interactive domain 3B (BRIGHT-like)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56380

Tuberculist Genomic Region

66607 membrane-spanning 4-domains, subfamily A, member 4D

Details for - - membrane-spanning 4-domains, subfamily A, member 4D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66607

Tuberculist Genomic Region

68087 dephospho-CoA kinase domain containing

Details for RP23-463E7.9 - dephospho-CoA kinase domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68087

Tuberculist Genomic Region

68267 solute carrier family 25 (mitochondrial carrier, glutamate), member 22

Details for - - solute carrier family 25 (mitochondrial carrier, glutamate), member 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68267

Tuberculist Genomic Region

69440 DENN/MADD domain containing 6B

Details for - - DENN/MADD domain containing 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69440

Tuberculist Genomic Region

71086 RIKEN cDNA 4933412E12 gene

Details for - - RIKEN cDNA 4933412E12 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71086

Tuberculist Genomic Region

74153 ubiquitin-like modifier activating enzyme 7

Details for - - ubiquitin-like modifier activating enzyme 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74153

Tuberculist Genomic Region

77578 B cell CLL/lymphoma 9

Details for - - B cell CLL/lymphoma 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77578

Tuberculist Genomic Region

78830 solute carrier family 25 (mitochondrial carrier, Aralar), member 12

Details for RP23-299A2.2 - solute carrier family 25 (mitochondrial carrier, Aralar), member 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78830

Tuberculist Genomic Region

98432 PH domain and leucine rich repeat protein phosphatase 1

Details for - - PH domain and leucine rich repeat protein phosphatase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98432

Tuberculist Genomic Region

320148 RIKEN cDNA B430306N03 gene

Details for - - RIKEN cDNA B430306N03 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320148

Tuberculist Genomic Region

434341 NLR family, CARD domain containing 5

Details for mCG_131283 - NLR family, CARD domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434341

Tuberculist Genomic Region

621875 RIKEN cDNA A530040E14 gene

Details for - - RIKEN cDNA A530040E14 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 621875

Tuberculist Genomic Region

638247 RIKEN cDNA 9530082P21 gene

Details for - - RIKEN cDNA 9530082P21 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 638247

Tuberculist Genomic Region

69116 ubiquitin protein ligase E3 component n-recognin 4

Details for - - ubiquitin protein ligase E3 component n-recognin 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69116

Tuberculist Genomic Region

71566 CXADR-like membrane protein

Details for - - CXADR-like membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71566

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ISGF3G_03_M02771 0.225806 0.00000403

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.2 ASAAWGGAAAA NA 0.045 CCTCCTCYTCCY NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.74 CTGGCG NA 0.94 CGNCCGGG Zfp740.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.55 CNCGGA NA NA 0.69 ATGGGCNN NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-883b-5p 0.48 0.0000646

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