TargetScan_36 megaCluster: 2 Residual: 0.27

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_36 2 0.27 14 0.006 0.832824 0

Members

Displaying 1 - 39 of 39
100382 expressed sequence AW011738

Details for - - expressed sequence AW011738

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100382

Tuberculist Genomic Region

100503912 predicted gene 11772

Details for - - predicted gene 11772

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503912

Tuberculist Genomic Region

101985 U6 snRNA biogenesis 1

Details for - - U6 snRNA biogenesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101985

Tuberculist Genomic Region

11433 acid phosphatase 5, tartrate resistant

Details for - - acid phosphatase 5, tartrate resistant

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11433

Tuberculist Genomic Region

13003 versican

Details for - - versican

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13003

Tuberculist Genomic Region

13011 cystatin F (leukocystatin)

Details for RP23-156P22.1 - cystatin F (leukocystatin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13011

Tuberculist Genomic Region

15559 5-hydroxytryptamine (serotonin) receptor 2B

Details for - - 5-hydroxytryptamine (serotonin) receptor 2B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15559

Tuberculist Genomic Region

16477 jun B proto-oncogene

Details for - - jun B proto-oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16477

Tuberculist Genomic Region

16491 potassium voltage-gated channel, shaker-related subfamily, member 3

Details for - - potassium voltage-gated channel, shaker-related subfamily, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16491

Tuberculist Genomic Region

16497 potassium voltage-gated channel, shaker-related subfamily, beta member 1

Details for - - potassium voltage-gated channel, shaker-related subfamily, beta member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16497

Tuberculist Genomic Region

17329 chemokine (C-X-C motif) ligand 9

Details for - - chemokine (C-X-C motif) ligand 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17329

Tuberculist Genomic Region

19222 prostaglandin I receptor (IP)

Details for - - prostaglandin I receptor (IP)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19222

Tuberculist Genomic Region

213233 TAP binding protein-like

Details for - - TAP binding protein-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213233

Tuberculist Genomic Region

230157 transmembrane protein with EGF-like and two follistatin-like domains 1

Details for RP23-141C15.2 - transmembrane protein with EGF-like and two follistatin-like domains 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230157

Tuberculist Genomic Region

29810 BCL2-associated athanogene 3

Details for MNCb-2243 - BCL2-associated athanogene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29810

Tuberculist Genomic Region

347722 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

Details for - - ArfGAP with GTPase domain, ankyrin repeat and PH domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 347722

Tuberculist Genomic Region

381417 predicted gene 14085

Details for RP23-357I14.1 - predicted gene 14085

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381417

Tuberculist Genomic Region

54384 myotubularin related protein 7

Details for - - myotubularin related protein 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54384

Tuberculist Genomic Region

667373 predicted gene 14446

Details for - - predicted gene 14446

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 667373

Tuberculist Genomic Region

67446 dual specificity phosphatase 28

Details for - - dual specificity phosphatase 28

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67446

Tuberculist Genomic Region

67844 RAB32, member RAS oncogene family

Details for - - RAB32, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67844

Tuberculist Genomic Region

74481 basic leucine zipper transcription factor, ATF-like 2

Details for - - basic leucine zipper transcription factor, ATF-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74481

Tuberculist Genomic Region

101187 poly (ADP-ribose) polymerase family, member 11

Details for - - poly (ADP-ribose) polymerase family, member 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101187

Tuberculist Genomic Region

14089 fibroblast activation protein

Details for RP23-343C17.4 - fibroblast activation protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14089

Tuberculist Genomic Region

232889 phospholipase A2, group IVC (cytosolic, calcium-independent)

Details for - - phospholipase A2, group IVC (cytosolic, calcium-independent)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232889

Tuberculist Genomic Region

380713 scavenger receptor class F, member 1

Details for RP23-384C18.11-001 - scavenger receptor class F, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380713

Tuberculist Genomic Region

16169 interleukin 15 receptor, alpha chain

Details for RP23-114B13.4 - interleukin 15 receptor, alpha chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16169

Tuberculist Genomic Region

227659 solute carrier family 2 (facilitated glucose transporter), member 6

Details for RP23-449M10.2 - solute carrier family 2 (facilitated glucose transporter), member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227659

Tuberculist Genomic Region

434204 WAS protein homolog associated with actin, golgi membranes and microtubules

Details for - - WAS protein homolog associated with actin, golgi membranes and microtubules

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 434204

Tuberculist Genomic Region

74732 syntaxin 11

Details for - - syntaxin 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74732

Tuberculist Genomic Region

12515 CD69 antigen

Details for - - CD69 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12515

Tuberculist Genomic Region

13163 Fas death domain-associated protein

Details for - - Fas death domain-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13163

Tuberculist Genomic Region

229003 helicase with zinc finger 2, transcriptional coactivator

Details for RP23-401M24.3 - helicase with zinc finger 2, transcriptional coactivator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 229003

Tuberculist Genomic Region

245126 T cell-interacting, activating receptor on myeloid cells 1

Details for - - T cell-interacting, activating receptor on myeloid cells 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 245126

Tuberculist Genomic Region

74646 splA/ryanodine receptor domain and SOCS box containing 1

Details for RP23-169H13.1 - splA/ryanodine receptor domain and SOCS box containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74646

Tuberculist Genomic Region

80285 poly (ADP-ribose) polymerase family, member 9

Details for - - poly (ADP-ribose) polymerase family, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80285

Tuberculist Genomic Region

17948 NLR family, apoptosis inhibitory protein 2

Details for RP23-333E24.2 - NLR family, apoptosis inhibitory protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17948

Tuberculist Genomic Region

18037 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon

Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18037

Tuberculist Genomic Region

22035 tumor necrosis factor (ligand) superfamily, member 10

Details for - - tumor necrosis factor (ligand) superfamily, member 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22035

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF9_IRF_full_trimeric_15_1 0.351351 0.0000000293

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.18 AAMAACAAAAA V$FOXP1_01_M00987 1.7 AAARAGAAAMTA STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$ICSBP_Q6_M00699, V$ISRE_01_M00258, V$IRF2_Q6_M01882, V$IRF_Q6_M00772, V$IRF_Q6_01_M00972, V$IRF1_Q6_01_M01881, V$IRF8_Q6_M01665, V$ISGF3G_03_M02771, V$IRF3_05_M02767, V$IRF1_01_M00062

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.62 CTCCGC NA 0.82 GCGGGGNT V$SP1_Q6_M00196, V$SP1_Q6_01_M00931, V$KLF7_03_M02773, V$SP1_Q4_01_M00932, V$GC_01_M00255, V$SP1_Q2_01_M00933, V$SMAD4_04_M02898, V$SP4_Q5_M01273, V$SP1_01_M00008, V$SP1_03_M02281, Klf7.1, Smad3.1, Ascl2.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.55 ACAGGA NA NA 0.56 ANGNGGAA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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