TargetScan_69 megaCluster: 3 Residual: 0.16

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_69 3 0.16 15 0 0.953293 0

Members

Displaying 1 - 33 of 33
100033459 pyrin domain containing 3

Details for - - pyrin domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100033459

Tuberculist Genomic Region

100702 guanylate binding protein 6

Details for - - guanylate binding protein 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100702

Tuberculist Genomic Region

106759 toll-like receptor adaptor molecule 1

Details for - - toll-like receptor adaptor molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106759

Tuberculist Genomic Region

108116 solute carrier organic anion transporter family, member 3a1

Details for - - solute carrier organic anion transporter family, member 3a1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108116

Tuberculist Genomic Region

108154 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6

Details for - - a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108154

Tuberculist Genomic Region

11603 agrin

Details for RP23-139J18.2 - agrin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11603

Tuberculist Genomic Region

12370 caspase 8

Details for - - caspase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12370

Tuberculist Genomic Region

14118 fibrillin 1

Details for RP23-368I1.1 - fibrillin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14118

Tuberculist Genomic Region

14859 glutathione S-transferase, alpha 3

Details for - - glutathione S-transferase, alpha 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14859

Tuberculist Genomic Region

170759 ATPase type 13A1

Details for - - ATPase type 13A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170759

Tuberculist Genomic Region

18991 POU domain, class 3, transcription factor 1

Details for RP23-230F2.2 - POU domain, class 3, transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18991

Tuberculist Genomic Region

19275 protein tyrosine phosphatase, receptor type, N

Details for - - protein tyrosine phosphatase, receptor type, N

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19275

Tuberculist Genomic Region

20847 signal transducer and activator of transcription 2

Details for - - signal transducer and activator of transcription 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20847

Tuberculist Genomic Region

20853 staufen (RNA binding protein) homolog 1 (Drosophila)

Details for RP23-19L12.1 - staufen (RNA binding protein) homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20853

Tuberculist Genomic Region

223693 transmembrane protein 184b

Details for - - transmembrane protein 184b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223693

Tuberculist Genomic Region

224794 ectonucleotide pyrophosphatase/phosphodiesterase 4

Details for - - ectonucleotide pyrophosphatase/phosphodiesterase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224794

Tuberculist Genomic Region

231430 cytochrome c oxidase assembly protein 18

Details for - - cytochrome c oxidase assembly protein 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231430

Tuberculist Genomic Region

243771 poly (ADP-ribose) polymerase family, member 12

Details for - - poly (ADP-ribose) polymerase family, member 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243771

Tuberculist Genomic Region

30935 torsin family 3, member A

Details for - - torsin family 3, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30935

Tuberculist Genomic Region

326623 tumor necrosis factor (ligand) superfamily, member 15

Details for - - tumor necrosis factor (ligand) superfamily, member 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 326623

Tuberculist Genomic Region

327957 SLP adaptor and CSK interacting membrane protein

Details for RP23-326P7.14-001 - SLP adaptor and CSK interacting membrane protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327957

Tuberculist Genomic Region

329260 DENN/MADD domain containing 1B

Details for - - DENN/MADD domain containing 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 329260

Tuberculist Genomic Region

56738 molybdenum cofactor synthesis 1

Details for - - molybdenum cofactor synthesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56738

Tuberculist Genomic Region

65107 low-density lipoprotein receptor-related protein 10

Details for - - low-density lipoprotein receptor-related protein 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65107

Tuberculist Genomic Region

66412 arrestin domain containing 4

Details for - - arrestin domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66412

Tuberculist Genomic Region

67138 hect domain and RLD 6

Details for - - hect domain and RLD 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67138

Tuberculist Genomic Region

68027 transmembrane protein 178

Details for - - transmembrane protein 178

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68027

Tuberculist Genomic Region

68497 apoptosis resistant E3 ubiquitin protein ligase 1

Details for - - apoptosis resistant E3 ubiquitin protein ligase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68497

Tuberculist Genomic Region

69538 anthrax toxin receptor 1

Details for - - anthrax toxin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69538

Tuberculist Genomic Region

70144 leucine-rich repeats and calponin homology (CH) domain containing 3

Details for - - leucine-rich repeats and calponin homology (CH) domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70144

Tuberculist Genomic Region

74748 SLAM family member 8

Details for - - SLAM family member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74748

Tuberculist Genomic Region

75560 E1A binding protein p400

Details for - - E1A binding protein p400

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75560

Tuberculist Genomic Region

14289 formyl peptide receptor 2

Details for - - formyl peptide receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14289

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
IRF8_IRF_full_dimeric_14_1 0.484848 0.0000000000000382

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1 CCGARCGG NA NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.58 GGAANG NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-191 0.6 0.0000601

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-128 0.642857 0.000000799

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