TargetScan_73 megaCluster: 7 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_73 7 0.18 15 0 0.932984 0

Members

Displaying 1 - 26 of 26
11676 aldolase C, fructose-bisphosphate

Details for - - aldolase C, fructose-bisphosphate

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11676

Tuberculist Genomic Region

18597 pyruvate dehydrogenase E1 alpha 1

Details for RP23-36P16.4 - pyruvate dehydrogenase E1 alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18597

Tuberculist Genomic Region

19139 phosphoribosyl pyrophosphate synthetase 1

Details for RP23-137E3.3 - phosphoribosyl pyrophosphate synthetase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19139

Tuberculist Genomic Region

209416 G patch domain and KOW motifs

Details for RP23-109E24.1 - G patch domain and KOW motifs

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209416

Tuberculist Genomic Region

217333 tripartite motif-containing 47

Details for RP23-42F6.7 - tripartite motif-containing 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217333

Tuberculist Genomic Region

22401 zinc finger matrin type 3

Details for - - zinc finger matrin type 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22401

Tuberculist Genomic Region

227707 cDNA sequence BC005624

Details for RP23-221O14.10-001 - cDNA sequence BC005624

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227707

Tuberculist Genomic Region

233056 zinc finger protein 790

Details for - - zinc finger protein 790

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233056

Tuberculist Genomic Region

26371 cytosolic iron-sulfur protein assembly 1

Details for RP23-206D14.3 - cytosolic iron-sulfur protein assembly 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26371

Tuberculist Genomic Region

28040 DNA segment, Chr 6, Wayne State University 163, expressed

Details for - - DNA segment, Chr 6, Wayne State University 163, expressed

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 28040

Tuberculist Genomic Region

50799 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

Details for - - solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50799

Tuberculist Genomic Region

53317 pleiotropic regulator 1, PRL1 homolog (Arabidopsis)

Details for - - pleiotropic regulator 1, PRL1 homolog (Arabidopsis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53317

Tuberculist Genomic Region

66335 ATPase, H+ transporting, lysosomal V1 subunit C1

Details for - - ATPase, H+ transporting, lysosomal V1 subunit C1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66335

Tuberculist Genomic Region

66799 ubiquitin-conjugating enzyme E2W (putative)

Details for - - ubiquitin-conjugating enzyme E2W (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66799

Tuberculist Genomic Region

67201 glyoxalase domain containing 4

Details for RP23-147P4.6 - glyoxalase domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67201

Tuberculist Genomic Region

67247 mitochondrial amidoxime reducing component 2

Details for - - mitochondrial amidoxime reducing component 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67247

Tuberculist Genomic Region

67466 phosducin-like

Details for RP23-464H12.4 - phosducin-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67466

Tuberculist Genomic Region

68260 tRNA methyltranferase 12

Details for - - tRNA methyltranferase 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68260

Tuberculist Genomic Region

68839 ankyrin repeat domain 46

Details for - - ankyrin repeat domain 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68839

Tuberculist Genomic Region

70207 translational activator of mitochondrially encoded cytochrome c oxidase I

Details for RP23-81G14.4 - translational activator of mitochondrially encoded cytochrome c oxidase I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70207

Tuberculist Genomic Region

71706 solute carrier family 46, member 3

Details for - - solute carrier family 46, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71706

Tuberculist Genomic Region

73694 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73694

Tuberculist Genomic Region

98828 cell division cycle 123

Details for RP23-307E15.1 - cell division cycle 123

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98828

Tuberculist Genomic Region

241226 integrin alpha 8

Details for RP23-202C2.1 - integrin alpha 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241226

Tuberculist Genomic Region

381802 tRNA splicing endonuclease 2 homolog (S. cerevisiae)

Details for - - tRNA splicing endonuclease 2 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381802

Tuberculist Genomic Region

71743 Coenzyme A synthase

Details for RP23-440M18.3 - Coenzyme A synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71743

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
3.5 TTCTTNCYTTY NA 8200 TRGGGNAGSAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.38 CGGCGA NA 1.47 CGGCGACA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.44 TACGTT NA NA 0.73 GGTGNNTT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-1195 0.608696 0.000049

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3089-5p 0.565217 0.00000146

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