TargetScan_77 megaCluster: 2 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_77 2 0.14 15 0 0.965253 0

Members

Displaying 1 - 24 of 24
100040462 myeloid nuclear differentiation antigen like

Details for - - myeloid nuclear differentiation antigen like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040462

Tuberculist Genomic Region

11477 activin A receptor, type 1

Details for RP23-100B18.4 - activin A receptor, type 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11477

Tuberculist Genomic Region

12389 caveolin 1, caveolae protein

Details for - - caveolin 1, caveolae protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12389

Tuberculist Genomic Region

12494 CD38 antigen

Details for - - CD38 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12494

Tuberculist Genomic Region

14538 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme

Details for - - glucosaminyl (N-acetyl) transferase 2, I-branching enzyme

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14538

Tuberculist Genomic Region

15958 interferon-induced protein with tetratricopeptide repeats 2

Details for - - interferon-induced protein with tetratricopeptide repeats 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15958

Tuberculist Genomic Region

170768 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

Details for RP23-428M4.3 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170768

Tuberculist Genomic Region

17472 guanylate binding protein 4

Details for - - guanylate binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17472

Tuberculist Genomic Region

19124 protein C receptor, endothelial

Details for RP23-388H13.2 - protein C receptor, endothelial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19124

Tuberculist Genomic Region

20393 serum/glucocorticoid regulated kinase 1

Details for - - serum/glucocorticoid regulated kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20393

Tuberculist Genomic Region

228608 spermine oxidase

Details for RP23-442K11.1 - spermine oxidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228608

Tuberculist Genomic Region

23961 2'-5' oligoadenylate synthetase 1B

Details for - - 2'-5' oligoadenylate synthetase 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23961

Tuberculist Genomic Region

240327 predicted gene 4951

Details for - - predicted gene 4951

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240327

Tuberculist Genomic Region

319765 insulin-like growth factor 2 mRNA binding protein 2

Details for RP23-50H13.1 - insulin-like growth factor 2 mRNA binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 319765

Tuberculist Genomic Region

327978 schlafen 5

Details for RP23-392I13.5 - schlafen 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 327978

Tuberculist Genomic Region

380916 leucine-rich repeats and calponin homology (CH) domain containing 1

Details for - - leucine-rich repeats and calponin homology (CH) domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 380916

Tuberculist Genomic Region

381287 RIKEN cDNA A530032D15Rik gene

Details for - - RIKEN cDNA A530032D15Rik gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381287

Tuberculist Genomic Region

56066 chemokine (C-X-C motif) ligand 11

Details for - - chemokine (C-X-C motif) ligand 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56066

Tuberculist Genomic Region

60440 interferon inducible GTPase 1

Details for - - interferon inducible GTPase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60440

Tuberculist Genomic Region

631323 predicted gene 12250

Details for - - predicted gene 12250

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 631323

Tuberculist Genomic Region

65221 solute carrier family 15, member 3

Details for - - solute carrier family 15, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65221

Tuberculist Genomic Region

22695 zinc finger protein 36

Details for - - zinc finger protein 36

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22695

Tuberculist Genomic Region

241447 ceramide synthase 6

Details for RP23-431D4.1 - ceramide synthase 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241447

Tuberculist Genomic Region

71586 interferon induced with helicase C domain 1

Details for RP23-34J8.2 - interferon induced with helicase C domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71586

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF1_Q6_01_M01881 0.625 0.00000000029

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000000000000031 ARGAAAGAGAA STAT1_MA0137.1 0.00021 TKAARAANARGA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.69 CCTCGG NA 1.21 GAAACNGA Irf3.1, Isgf3g.1, IRF5_IRF_full_dimeric_14_1, IRF3_IRF_full_trimeric_21_1, IRF8_IRF_full_dimeric_14_1, IRF9_IRF_full_trimeric_15_1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 CGACNT NA NA 0.7 CGCGACGC NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-448 0.736842 0.000052

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-101a 0.47619 0.00000681

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