TargetScan_86 megaCluster: 3 Residual: 0.30

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_86 3 0.30 14 0.002 0.837542 0.003

Members

Displaying 1 - 23 of 23
12552 cadherin 11

Details for - - cadherin 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12552

Tuberculist Genomic Region

15894 intercellular adhesion molecule 1

Details for - - intercellular adhesion molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15894

Tuberculist Genomic Region

18173 solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

Details for - - solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18173

Tuberculist Genomic Region

20210 serum amyloid A 3

Details for - - serum amyloid A 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20210

Tuberculist Genomic Region

20779 Rous sarcoma oncogene

Details for RP23-169M4.1 - Rous sarcoma oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20779

Tuberculist Genomic Region

209446 transcription factor E3

Details for RP23-109E24.7 - transcription factor E3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209446

Tuberculist Genomic Region

22290 ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome

Details for - - ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22290

Tuberculist Genomic Region

226976 KAT8 regulatory NSL complex subunit 3

Details for - - KAT8 regulatory NSL complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226976

Tuberculist Genomic Region

241452 dehydrogenase/reductase (SDR family) member 9

Details for RP24-111M20.1 - dehydrogenase/reductase (SDR family) member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241452

Tuberculist Genomic Region

258681 olfactory receptor 235

Details for - - olfactory receptor 235

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258681

Tuberculist Genomic Region

54711 pleiomorphic adenoma gene-like 2

Details for RP23-192G18.4 - pleiomorphic adenoma gene-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54711

Tuberculist Genomic Region

65112 prostate transmembrane protein, androgen induced 1

Details for RP23-412O4.1 - prostate transmembrane protein, androgen induced 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65112

Tuberculist Genomic Region

672511 ring finger protein 213

Details for RP23-25M3.4 - ring finger protein 213

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 672511

Tuberculist Genomic Region

74919 solute carrier family 35, member F6

Details for - - solute carrier family 35, member F6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74919

Tuberculist Genomic Region

83490 phosphoinositide-3-kinase adaptor protein 1

Details for - - phosphoinositide-3-kinase adaptor protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83490

Tuberculist Genomic Region

100040462 myeloid nuclear differentiation antigen like

Details for - - myeloid nuclear differentiation antigen like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040462

Tuberculist Genomic Region

12394 runt related transcription factor 1

Details for - - runt related transcription factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12394

Tuberculist Genomic Region

16164 interleukin 13 receptor, alpha 1

Details for RP23-132G2.1 - interleukin 13 receptor, alpha 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16164

Tuberculist Genomic Region

19201 proline-serine-threonine phosphatase-interacting protein 2

Details for - - proline-serine-threonine phosphatase-interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19201

Tuberculist Genomic Region

231549 leucine rich repeat containing 8D

Details for - - leucine rich repeat containing 8D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231549

Tuberculist Genomic Region

56489 inhibitor of kappaB kinase epsilon

Details for - - inhibitor of kappaB kinase epsilon

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56489

Tuberculist Genomic Region

65221 solute carrier family 15, member 3

Details for - - solute carrier family 15, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65221

Tuberculist Genomic Region

668139 predicted gene 8995

Details for - - predicted gene 8995

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 668139

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Zfp281.2, V_MAZ_Q6_01_M02023, V_ZFP281_01_M01597, V_ZFP281_04_M02831 1, 1, 1, 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.2 GGRAANGAGGA NA 200 AGAAAGAGMMA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.75 CGACCG NA 1.01 TCGGACCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.65 NGGGGG NA NA 0.84 AGGNKGCT NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-344 0.647059 0.0000482

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3062 0.611111 0.00000172

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