TargetScan_99 megaCluster: 11 Residual: 0.27 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_99	11	0.27	15	0	0.870046	0

Members

Displaying 1 - 21 of 21

12545 cell division cycle 7 (S. cerevisiae) Details for - - cell division cycle 7 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12545 Tuberculist Genomic Region	12763 cytidine monophospho-N-acetylneuraminic acid hydroxylase Details for RP23-80C18.1 - cytidine monophospho-N-acetylneuraminic acid hydroxylase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12763 Tuberculist Genomic Region
20133 ribonucleotide reductase M1 Details for - - ribonucleotide reductase M1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20133 Tuberculist Genomic Region	218885 oxidoreductase NAD-binding domain containing 1 Details for - - oxidoreductase NAD-binding domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218885 Tuberculist Genomic Region
227154 STE20-related kinase adaptor beta Details for - - STE20-related kinase adaptor beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227154 Tuberculist Genomic Region	28080 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit Details for - - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 28080 Tuberculist Genomic Region
433771 mitochondrial inner membrane organizing system 1 Details for RP23-65B16.4 - mitochondrial inner membrane organizing system 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 433771 Tuberculist Genomic Region	448850 zinc finger, HIT type 3 Details for RP23-391K14.3 - zinc finger, HIT type 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 448850 Tuberculist Genomic Region
54124 CDC28 protein kinase 1b Details for - - CDC28 protein kinase 1b GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54124 Tuberculist Genomic Region	56419 diaphanous homolog 3 (Drosophila) Details for - - diaphanous homolog 3 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56419 Tuberculist Genomic Region
67041 3-oxoacid CoA transferase 1 Details for - - 3-oxoacid CoA transferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67041 Tuberculist Genomic Region	67196 ubiquitin-conjugating enzyme E2T (putative) Details for - - ubiquitin-conjugating enzyme E2T (putative) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67196 Tuberculist Genomic Region
68014 zwilch kinetochore protein Details for - - zwilch kinetochore protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68014 Tuberculist Genomic Region	68026 RIKEN cDNA 2810417H13 gene Details for - - RIKEN cDNA 2810417H13 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68026 Tuberculist Genomic Region
72415 shugoshin-like 1 (S. pombe) Details for - - shugoshin-like 1 (S. pombe) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72415 Tuberculist Genomic Region	72512 transmembrane protein 173 Details for - - transmembrane protein 173 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72512 Tuberculist Genomic Region
17220 minichromosome maintenance deficient 7 (S. cerevisiae) Details for - - minichromosome maintenance deficient 7 (S. cerevisiae) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17220 Tuberculist Genomic Region	19348 kinesin family member 20A Details for - - kinesin family member 20A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19348 Tuberculist Genomic Region
66355 guanosine monophosphate reductase Details for - - guanosine monophosphate reductase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66355 Tuberculist Genomic Region	66570 centromere protein M Details for - - centromere protein M GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66570 Tuberculist Genomic Region
75597 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75597 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ESRRA_03_M02748	0.571429	0.000000997

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
2.8	TTTTKTTTTTTT	NA	9200	ACTTAATTYTA	Prrx2_MA0075.1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.26	TTCGCG	V$E2F1_Q6_01_M00940, V$E2F_01_M00024, V$E2F_Q6_M00427, V$E2F_Q3_01_M00918, V$E2F1_Q6_M00431, V$E2F_Q4_02_M00939, V$E2F_Q3_M00425, V$E2F4DP1_01_M00738, V$E2F_Q4_M00426, V$E2F_03_M00516, V$E2F_Q4_01_M00919, V$E2F_02_M00050, V$E2F1DP1RB_01_M00740, V$E2F_Q6_01_M00920, V$E2F4DP2_01_M00739	1.63	CGCGGGAA	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.57	ATACGC	NA	NA	0.68	AGCTCGAC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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