PITA_137 megaCluster: 1 Residual: 0.13 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_137	1	0.13	15	0	0.968127	0

Members

Displaying 1 - 31 of 31

11492 a disintegrin and metallopeptidase domain 19 (meltrin beta) Details for RP23-29H5.4 - a disintegrin and metallopeptidase domain 19 (meltrin beta) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11492 Tuberculist Genomic Region	12769 chemokine (C-C motif) receptor 9 Details for - - chemokine (C-C motif) receptor 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12769 Tuberculist Genomic Region
209645 BEN domain containing 7 Details for RP23-198G1.1 - BEN domain containing 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 209645 Tuberculist Genomic Region	239273 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 Details for - - ATP-binding cassette, sub-family C (CFTR/MRP), member 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239273 Tuberculist Genomic Region
240665 cyclin J Details for - - cyclin J GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240665 Tuberculist Genomic Region	330723 HtrA serine peptidase 4 Details for - - HtrA serine peptidase 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 330723 Tuberculist Genomic Region
407821 zinc and ring finger 3 Details for RP23-293J16.2 - zinc and ring finger 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 407821 Tuberculist Genomic Region	67245 pellino 1 Details for RP23-93O11.1 - pellino 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67245 Tuberculist Genomic Region
72580 zinc finger with UFM1-specific peptidase domain Details for - - zinc finger with UFM1-specific peptidase domain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72580 Tuberculist Genomic Region	74123 forkhead box P4 Details for - - forkhead box P4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74123 Tuberculist Genomic Region
78781 zinc finger CCCH type, antiviral 1 Details for - - zinc finger CCCH type, antiviral 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78781 Tuberculist Genomic Region	93730 leucine zipper transcription factor-like 1 Details for - - leucine zipper transcription factor-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 93730 Tuberculist Genomic Region
114874 DDHD domain containing 1 Details for - - DDHD domain containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 114874 Tuberculist Genomic Region	12562 cadherin 5 Details for - - cadherin 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12562 Tuberculist Genomic Region
13537 dual specificity phosphatase 2 Details for RP23-206D14.6 - dual specificity phosphatase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13537 Tuberculist Genomic Region	14528 GTP cyclohydrolase 1 Details for - - GTP cyclohydrolase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14528 Tuberculist Genomic Region
16168 interleukin 15 Details for - - interleukin 15 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16168 Tuberculist Genomic Region	16193 interleukin 6 Details for - - interleukin 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16193 Tuberculist Genomic Region
207728 phosphodiesterase 2A, cGMP-stimulated Details for - - phosphodiesterase 2A, cGMP-stimulated GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 207728 Tuberculist Genomic Region	239122 SET domain, bifurcated 2 Details for mCG_13852 - SET domain, bifurcated 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 239122 Tuberculist Genomic Region
246198 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 Details for RP23-94N18.5 - myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 246198 Tuberculist Genomic Region	257632 nucleotide-binding oligomerization domain containing 2 Details for - - nucleotide-binding oligomerization domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 257632 Tuberculist Genomic Region
319448 fibronectin type III domain containing 3A Details for - - fibronectin type III domain containing 3A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319448 Tuberculist Genomic Region	434204 WAS protein homolog associated with actin, golgi membranes and microtubules Details for - - WAS protein homolog associated with actin, golgi membranes and microtubules GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 434204 Tuberculist Genomic Region
54384 myotubularin related protein 7 Details for - - myotubularin related protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54384 Tuberculist Genomic Region	547253 poly (ADP-ribose) polymerase family, member 14 Details for - - poly (ADP-ribose) polymerase family, member 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 547253 Tuberculist Genomic Region
71982 sorting nexin 10 Details for - - sorting nexin 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 71982 Tuberculist Genomic Region	75767 RAB11 family interacting protein 1 (class I) Details for - - RAB11 family interacting protein 1 (class I) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75767 Tuberculist Genomic Region
14571 glycerol phosphate dehydrogenase 2, mitochondrial Details for - - glycerol phosphate dehydrogenase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14571 Tuberculist Genomic Region	229898 guanylate binding protein 5 Details for - - guanylate binding protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229898 Tuberculist Genomic Region
628705 PHD finger protein 11C Details for mCG_1037415 - PHD finger protein 11C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 628705 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.258065	0.000000329

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00027	TYTTKTTYYTTT	NA	24	GCCCCNSCCACC	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_03_M02281, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$SP1_Q2_01_M00933, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$GKLF_02_M01588, V$ZFP281_01_M01597, V$ZFP281_04_M02831, V$GC_01_M00255, V$MAZR_01_M00491, V$ZNF219_01_M01122, V$CACD_01_M01113, V$MAZ_Q6_01_M02023, V$UF1H3BETA_Q6_M01068, V$KROX_Q6_M00982, V$WT1_Q6_01_M02036, V$SP1_02_M01303, V$ZFP740_03_M02834, V$SP2_01_M01783, V$WT1_Q6_M01118, V$KLF7_03_M02773, Zfp281.2, Zfp740.1, Klf7.1, SP8_C2H2_DBD_monomeric_12_1, SP3_C2H2_DBD_monomeric_11_1, SP1_C2H2_DBD_monomeric_11_1, KLF16_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.13	CGCCGCGN	NA		NA	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.49	GTATCG	NA	NA	0.68	CTACCACA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-191	0.758621	0.00000000219

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-5110	0.516129	0.0000398

Add comment

Log in or register to post comments