PITA_159 megaCluster: 11 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_159 11 0.14 15 0 0.963037 0

Members

Displaying 1 - 41 of 41
241226 integrin alpha 8

Details for RP23-202C2.1 - integrin alpha 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241226

Tuberculist Genomic Region

108671 DnaJ (Hsp40) homolog, subfamily C, member 9

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108671

Tuberculist Genomic Region

114714 RAD51 homolog C

Details for RP23-209O5.3 - RAD51 homolog C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114714

Tuberculist Genomic Region

12585 cerebellar degeneration-related 2

Details for - - cerebellar degeneration-related 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12585

Tuberculist Genomic Region

15270 H2A histone family, member X

Details for - - H2A histone family, member X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15270

Tuberculist Genomic Region

19363 RAD51 homolog B

Details for - - RAD51 homolog B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19363

Tuberculist Genomic Region

19891 replication protein A2

Details for RP23-442A20.4 - replication protein A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19891

Tuberculist Genomic Region

22171 thymidylate synthase

Details for - - thymidylate synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22171

Tuberculist Genomic Region

268759 RIKEN cDNA 9930012K11 gene

Details for - - RIKEN cDNA 9930012K11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 268759

Tuberculist Genomic Region

269224 PAS domain containing serine/threonine kinase

Details for - - PAS domain containing serine/threonine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269224

Tuberculist Genomic Region

381101 2'-deoxynucleoside 5'-phosphate N-hydrolase 1

Details for - - 2'-deoxynucleoside 5'-phosphate N-hydrolase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381101

Tuberculist Genomic Region

52276 cell division cycle associated 8

Details for RP23-168M5.8 - cell division cycle associated 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52276

Tuberculist Genomic Region

56452 origin recognition complex, subunit 6

Details for - - origin recognition complex, subunit 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56452

Tuberculist Genomic Region

59001 polymerase (DNA directed), epsilon 3 (p17 subunit)

Details for RP24-189G18.8 - polymerase (DNA directed), epsilon 3 (p17 subunit)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 59001

Tuberculist Genomic Region

66194 pyrroline-5-carboxylate reductase-like

Details for - - pyrroline-5-carboxylate reductase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66194

Tuberculist Genomic Region

66336 centromere protein P

Details for - - centromere protein P

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66336

Tuberculist Genomic Region

67139 MIS12 homolog (yeast)

Details for DN-393H17.5 - MIS12 homolog (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67139

Tuberculist Genomic Region

67203 nuclear distribution gene E homolog 1 (A nidulans)

Details for - - nuclear distribution gene E homolog 1 (A nidulans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67203

Tuberculist Genomic Region

68014 zwilch kinetochore protein

Details for - - zwilch kinetochore protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68014

Tuberculist Genomic Region

70235 POC1 centriolar protein homolog A (Chlamydomonas)

Details for - - POC1 centriolar protein homolog A (Chlamydomonas)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70235

Tuberculist Genomic Region

12580 cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)

Details for RP23-320F19.3 - cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12580

Tuberculist Genomic Region

18140 ubiquitin-like, containing PHD and RING finger domains, 1

Details for - - ubiquitin-like, containing PHD and RING finger domains, 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18140

Tuberculist Genomic Region

20014 ribophorin II

Details for RP23-163J20.6 - ribophorin II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20014

Tuberculist Genomic Region

20878 aurora kinase A

Details for - - aurora kinase A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20878

Tuberculist Genomic Region

228421 kinesin family member 18A

Details for RP23-206C1.1 - kinesin family member 18A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228421

Tuberculist Genomic Region

26934 Rac GTPase-activating protein 1

Details for - - Rac GTPase-activating protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26934

Tuberculist Genomic Region

110033 kinesin family member 22

Details for - - kinesin family member 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110033

Tuberculist Genomic Region

22137 Ttk protein kinase

Details for - - Ttk protein kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22137

Tuberculist Genomic Region

224171 RIKEN cDNA C330027C09 gene

Details for - - RIKEN cDNA C330027C09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224171

Tuberculist Genomic Region

240641 kinesin family member 20B

Details for - - kinesin family member 20B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240641

Tuberculist Genomic Region

68026 RIKEN cDNA 2810417H13 gene

Details for - - RIKEN cDNA 2810417H13 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68026

Tuberculist Genomic Region

68275 replication protein A1

Details for RP23-113D4.1 - replication protein A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68275

Tuberculist Genomic Region

108912 cell division cycle associated 2

Details for - - cell division cycle associated 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108912

Tuberculist Genomic Region

12449 cyclin F

Details for - - cyclin F

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12449

Tuberculist Genomic Region

17279 maternal embryonic leucine zipper kinase

Details for RP23-382O11.1 - maternal embryonic leucine zipper kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17279

Tuberculist Genomic Region

209334 Gen homolog 1, endonuclease (Drosophila)

Details for - - Gen homolog 1, endonuclease (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209334

Tuberculist Genomic Region

225745 HAUS augmin-like complex, subunit 1

Details for - - HAUS augmin-like complex, subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225745

Tuberculist Genomic Region

623474 RAD54 homolog B (S. cerevisiae)

Details for RP23-242O9.3 - RAD54 homolog B (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 623474

Tuberculist Genomic Region

67141 F-box protein 5

Details for - - F-box protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67141

Tuberculist Genomic Region

67849 cell division cycle associated 5

Details for - - cell division cycle associated 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67849

Tuberculist Genomic Region

20833 structure specific recognition protein 1

Details for RP23-232L15.5 - structure specific recognition protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20833

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Fli1.1 0.414634 0.00000074

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000000001 AAANAMAAAAA NA 0.0000000092 RGCCAATCASAR NFYA_MA0060.1, Gfi_MA0038.1, V$NFYA_Q5_M02106, V$NFY_01_M00287, V$NFY_C_M00209, V$NFYC_Q5_M02107, V$NFY_Q6_M00185, V$CAAT_01_M00254, V$NFY_Q6_01_M00775, V$ALPHACP1_01_M00687, V$CAAT_C_M00200, V$HOXA7_01_M01108, V$DUXL_01_M01390, V$DUXBL_01_M02968, V$GFI1_01_M00250, V$GFI1_Q6_01_M02010

Upstream Weeder Motif

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.56 ACCGTTCN NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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