PITA_190 megaCluster: 2 Residual: 0.11 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_190	2	0.11	15	0	0.975583	0

Members

Displaying 1 - 17 of 17

13518 dystonin Details for - - dystonin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13518 Tuberculist Genomic Region	214133 tet methylcytosine dioxygenase 2 Details for - - tet methylcytosine dioxygenase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 214133 Tuberculist Genomic Region
241447 ceramide synthase 6 Details for RP23-431D4.1 - ceramide synthase 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 241447 Tuberculist Genomic Region	80750 NEDD4 binding protein 1 Details for - - NEDD4 binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80750 Tuberculist Genomic Region
11796 baculoviral IAP repeat-containing 3 Details for RP24-318P17.1 - baculoviral IAP repeat-containing 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11796 Tuberculist Genomic Region	14011 ets variant gene 6 (TEL oncogene) Details for - - ets variant gene 6 (TEL oncogene) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14011 Tuberculist Genomic Region
19225 prostaglandin-endoperoxide synthase 2 Details for - - prostaglandin-endoperoxide synthase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19225 Tuberculist Genomic Region	19663 RNA binding protein gene with multiple splicing Details for - - RNA binding protein gene with multiple splicing GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19663 Tuberculist Genomic Region
20656 superoxide dismutase 2, mitochondrial Details for - - superoxide dismutase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20656 Tuberculist Genomic Region	210106 PAP associated domain containing 7 Details for - - PAP associated domain containing 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 210106 Tuberculist Genomic Region
219140 spermatogenesis associated 13 Details for - - spermatogenesis associated 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 219140 Tuberculist Genomic Region	21929 tumor necrosis factor, alpha-induced protein 3 Details for - - tumor necrosis factor, alpha-induced protein 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21929 Tuberculist Genomic Region
22695 zinc finger protein 36 Details for - - zinc finger protein 36 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22695 Tuberculist Genomic Region	227449 zinc finger, CCHC domain containing 2 Details for - - zinc finger, CCHC domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227449 Tuberculist Genomic Region
228994 YTH domain family 1 Details for RP23-359C15.7 - YTH domain family 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 228994 Tuberculist Genomic Region	231991 cAMP responsive element binding protein 5 Details for - - cAMP responsive element binding protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231991 Tuberculist Genomic Region
319765 insulin-like growth factor 2 mRNA binding protein 2 Details for RP23-50H13.1 - insulin-like growth factor 2 mRNA binding protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 319765 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
SP1_MA0079.2, V_SP1_03_M02281, V_UF1H3BETA_Q6_M01068, SP3_C2H2_DBD_monomeric_11_1, V_SP4_Q5_M01273, V_SP1_Q2_01_M00933	1, 1, 1, 1, 1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
17	AGAAAAAAAAA	NA	660	CCCTCAGCCTG	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.59	NCCGCG	NA	1.85	CGCGNCGG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.85	GAATCG	NA	NA	1.04	CGCCGGTA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-466a-3p, mmu-miR-466c-3p, mmu-miR-297b-3p, mmu-miR-335-3p, mmu-miR-467g, mmu-miR-410, mmu-miR-466b-3p, mmu-miR-466d-3p, mmu-miR-466b-3-3p, mmu-miR-694, mmu-miR-466e-3p	1	0

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-320	0.714286	0.0000023

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