PITA_34 megaCluster: 8 Residual: 0.15

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_34 8 0.15 15 0 0.961154 0

Members

Displaying 1 - 28 of 28
109145 GINS complex subunit 4 (Sld5 homolog)

Details for - - GINS complex subunit 4 (Sld5 homolog)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109145

Tuberculist Genomic Region

117591 solute carrier family 2 (facilitated glucose transporter), member 9

Details for - - solute carrier family 2 (facilitated glucose transporter), member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 117591

Tuberculist Genomic Region

12566 cyclin-dependent kinase 2

Details for - - cyclin-dependent kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12566

Tuberculist Genomic Region

14247 Friend leukemia integration 1

Details for - - Friend leukemia integration 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14247

Tuberculist Genomic Region

18105 NAD(P)H dehydrogenase, quinone 2

Details for - - NAD(P)H dehydrogenase, quinone 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18105

Tuberculist Genomic Region

20226 seryl-aminoacyl-tRNA synthetase

Details for RP23-37G19.1 - seryl-aminoacyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20226

Tuberculist Genomic Region

20480 ClpB caseinolytic peptidase B

Details for - - ClpB caseinolytic peptidase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20480

Tuberculist Genomic Region

216527 cerebral cavernous malformation 2

Details for RP23-169J19.3 - cerebral cavernous malformation 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216527

Tuberculist Genomic Region

217031 transcriptional adaptor 2A

Details for RP23-395B22.4 - transcriptional adaptor 2A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217031

Tuberculist Genomic Region

223433 family with sequence similarity 105, member A

Details for - - family with sequence similarity 105, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223433

Tuberculist Genomic Region

224014 FYVE, RhoGEF and PH domain containing 4

Details for - - FYVE, RhoGEF and PH domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224014

Tuberculist Genomic Region

227102 ORM1-like 1 (S. cerevisiae)

Details for - - ORM1-like 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227102

Tuberculist Genomic Region

230996 RIKEN cDNA 9430015G10 gene

Details for RP23-139J18.1 - RIKEN cDNA 9430015G10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230996

Tuberculist Genomic Region

231834 sorting nexin 8

Details for - - sorting nexin 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231834

Tuberculist Genomic Region

241303 family with sequence similarity 78, member A

Details for RP23-55I14.8 - family with sequence similarity 78, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241303

Tuberculist Genomic Region

26406 mitogen-activated protein kinase kinase kinase 3

Details for RP23-81G14.5 - mitogen-activated protein kinase kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26406

Tuberculist Genomic Region

26951 zw10 kinetochore protein

Details for - - zw10 kinetochore protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26951

Tuberculist Genomic Region

27401 S-phase kinase-associated protein 2 (p45)

Details for - - S-phase kinase-associated protein 2 (p45)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27401

Tuberculist Genomic Region

52626 CDKN2A interacting protein N-terminal like

Details for RP23-263C23.1 - CDKN2A interacting protein N-terminal like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52626

Tuberculist Genomic Region

56462 mitochondrial carrier homolog 1 (C. elegans)

Details for - - mitochondrial carrier homolog 1 (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56462

Tuberculist Genomic Region

64214 regulator of G-protein signaling 18

Details for - - regulator of G-protein signaling 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64214

Tuberculist Genomic Region

67698 family with sequence similarity 174, member A

Details for - - family with sequence similarity 174, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67698

Tuberculist Genomic Region

68098 ring finger and CHY zinc finger domain containing 1

Details for - - ring finger and CHY zinc finger domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68098

Tuberculist Genomic Region

69226 sorting nexing 24

Details for - - sorting nexing 24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69226

Tuberculist Genomic Region

70650 zinc finger, CCHC domain containing 8

Details for - - zinc finger, CCHC domain containing 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70650

Tuberculist Genomic Region

72549 receptor accessory protein 4

Details for - - receptor accessory protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72549

Tuberculist Genomic Region

27015 polymerase (DNA directed), kappa

Details for - - polymerase (DNA directed), kappa

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27015

Tuberculist Genomic Region

56249 ARP8 actin-related protein 8

Details for - - ARP8 actin-related protein 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56249

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Sox11_HMG_DBD_dimeric_15_1 0.178571 0.0000325

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00049 AAAAAGARNAA NA 5200 ARATGTAGTTW NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.21 GCGCCG E2F2.2, E2F3.2, E2F3.1, E2F2.1 1.4 CGGGGCGN Bcl6b.2, Zfp410.1, Smad3.1, Zfp740.2, Sp4.1, Klf7.2, Klf7.1, Egr1.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.7 TGTCAGAG NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-149 0.555556 0.0000092

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