TargetScan_113 megaCluster: 3 Residual: 0.14 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_113	3	0.14	15	0	0.959181	0

Members

Displaying 1 - 18 of 18

12363 caspase 4, apoptosis-related cysteine peptidase Details for - - caspase 4, apoptosis-related cysteine peptidase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12363 Tuberculist Genomic Region	15957 interferon-induced protein with tetratricopeptide repeats 1 Details for - - interferon-induced protein with tetratricopeptide repeats 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15957 Tuberculist Genomic Region
16402 integrin alpha 5 (fibronectin receptor alpha) Details for - - integrin alpha 5 (fibronectin receptor alpha) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16402 Tuberculist Genomic Region	20442 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 Details for - - ST3 beta-galactoside alpha-2,3-sialyltransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20442 Tuberculist Genomic Region
212943 family with sequence similarity 46, member A Details for - - family with sequence similarity 46, member A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212943 Tuberculist Genomic Region	269181 mannoside acetylglucosaminyltransferase 4, isoenzyme A Details for - - mannoside acetylglucosaminyltransferase 4, isoenzyme A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269181 Tuberculist Genomic Region
269966 nucleoporin 98 Details for - - nucleoporin 98 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269966 Tuberculist Genomic Region	80750 NEDD4 binding protein 1 Details for - - NEDD4 binding protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80750 Tuberculist Genomic Region
100504453 predicted gene, 20236 Details for - - predicted gene, 20236 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504453 Tuberculist Genomic Region	16181 interleukin 1 receptor antagonist Details for RP23-218B17.2 - interleukin 1 receptor antagonist GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16181 Tuberculist Genomic Region
170736 parvin, beta Details for - - parvin, beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170736 Tuberculist Genomic Region	19271 protein tyrosine phosphatase, receptor type, J Details for RP24-113P16.2 - protein tyrosine phosphatase, receptor type, J GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19271 Tuberculist Genomic Region
20656 superoxide dismutase 2, mitochondrial Details for - - superoxide dismutase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20656 Tuberculist Genomic Region	22169 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial Details for - - cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22169 Tuberculist Genomic Region
228994 YTH domain family 1 Details for RP23-359C15.7 - YTH domain family 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 228994 Tuberculist Genomic Region	276950 schlafen 8 Details for RP23-392I13.9 - schlafen 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 276950 Tuberculist Genomic Region
54004 diaphanous homolog 2 (Drosophila) Details for - - diaphanous homolog 2 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54004 Tuberculist Genomic Region	58185 radical S-adenosyl methionine domain containing 2 Details for - - radical S-adenosyl methionine domain containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 58185 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
SP1_MA0079.2, V_SP1_03_M02281	1, 1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.28	TTNTKCTTTCY	NA	940	CASTTTCATTTT	STAT1_MA0137.1, IRF1_MA0050.1, IRF2_MA0051.1, V$ICSBP_Q6_M00699, V$ISRE_01_M00258, V$IRF_Q6_M00772, V$IRF2_Q6_M01882, V$IRF1_Q6_01_M01881, V$IRF_Q6_01_M00972, V$IRF2_01_M00063, V$IRF7_01_M00453, V$IRF1_Q6_M00747, V$ISGF3G_03_M02771, V$IRF1_01_M00062, V$IRF3_05_M02767, V$IRF8_Q6_M01665, V$BLIMP1_Q6_M01066, Isgf3g.1, Irf3.1, IRF7_IRF_DBD_dimeric_14_1, PRDM1_C2H2_full_monomeric-or-dimeric_15_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.1	CGGCGT	NA	1.36	CGCGGTGA	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.71	CGTAGT	NA	NA	0.85	GCAATTCC	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-496	0.846154	0.00000607

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-669h-5p	0.5625	0.00000289

Add comment

Log in or register to post comments