TargetScan_137 megaCluster: 8 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_137 8 0.21 15 0 0.925694 0

Members

Displaying 1 - 31 of 31
12892 coproporphyrinogen oxidase

Details for - - coproporphyrinogen oxidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12892

Tuberculist Genomic Region

16351 IAP promoted placental gene

Details for RP23-233B9.2 - IAP promoted placental gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16351

Tuberculist Genomic Region

233876 HIRA interacting protein 3

Details for - - HIRA interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233876

Tuberculist Genomic Region

66401 nudix (nucleoside diphosphate linked moiety X)-type motif 2

Details for RP23-100C7.1 - nudix (nucleoside diphosphate linked moiety X)-type motif 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66401

Tuberculist Genomic Region

70209 transmembrane protein 143

Details for - - transmembrane protein 143

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70209

Tuberculist Genomic Region

73825 protein phosphatase 1, regulatory subunit 21

Details for - - protein phosphatase 1, regulatory subunit 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73825

Tuberculist Genomic Region

74552 NIPA-like domain containing 3

Details for RP23-332E2.5 - NIPA-like domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74552

Tuberculist Genomic Region

103268 centrosomal protein 57-like 1

Details for - - centrosomal protein 57-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 103268

Tuberculist Genomic Region

106633 intraflagellar transport 140

Details for - - intraflagellar transport 140

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106633

Tuberculist Genomic Region

12802 cannabinoid receptor 2 (macrophage)

Details for RP23-161N17.5 - cannabinoid receptor 2 (macrophage)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12802

Tuberculist Genomic Region

12850 demethyl-Q 7

Details for - - demethyl-Q 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12850

Tuberculist Genomic Region

17828 biogenesis of lysosomal organelles complex-1, subunit 5, muted

Details for - - biogenesis of lysosomal organelles complex-1, subunit 5, muted

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17828

Tuberculist Genomic Region

19340 RAB3D, member RAS oncogene family

Details for - - RAB3D, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19340

Tuberculist Genomic Region

21824 thrombomodulin

Details for RP23-70N3.2 - thrombomodulin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21824

Tuberculist Genomic Region

227099 postmeiotic segregation increased 1 (S. cerevisiae)

Details for - - postmeiotic segregation increased 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227099

Tuberculist Genomic Region

227707 cDNA sequence BC005624

Details for RP23-221O14.10-001 - cDNA sequence BC005624

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227707

Tuberculist Genomic Region

233987 zinc finger protein 958

Details for - - zinc finger protein 958

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233987

Tuberculist Genomic Region

235339 dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)

Details for - - dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235339

Tuberculist Genomic Region

23992 protein kinase, interferon inducible double stranded RNA dependent activator

Details for RP23-468L22.1 - protein kinase, interferon inducible double stranded RNA dependent activator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23992

Tuberculist Genomic Region

56743 linker for activation of T cells family, member 2

Details for - - linker for activation of T cells family, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56743

Tuberculist Genomic Region

57373 A kinase (PRKA) interacting protein 1

Details for - - A kinase (PRKA) interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57373

Tuberculist Genomic Region

66349 ATP5S-like

Details for - - ATP5S-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66349

Tuberculist Genomic Region

67099 methyltransferase like 21A

Details for - - methyltransferase like 21A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67099

Tuberculist Genomic Region

67773 K(lysine) acetyltransferase 8

Details for - - K(lysine) acetyltransferase 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67773

Tuberculist Genomic Region

67939 prolyl-tRNA synthetase domain containing 1

Details for RP23-92B18.3 - prolyl-tRNA synthetase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67939

Tuberculist Genomic Region

70823 HMG box domain containing 4

Details for AL603864.1 - HMG box domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70823

Tuberculist Genomic Region

73451 zinc finger protein 763

Details for - - zinc finger protein 763

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73451

Tuberculist Genomic Region

74455 NOL1/NOP2/Sun domain family member 6

Details for RP23-303M15.1 - NOL1/NOP2/Sun domain family member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74455

Tuberculist Genomic Region

77032 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3

Details for - - thiosulfate sulfurtransferase (rhodanese)-like domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77032

Tuberculist Genomic Region

79464 lipoic acid synthetase

Details for - - lipoic acid synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 79464

Tuberculist Genomic Region

12412 chromobox 1

Details for RP23-353J21.1 - chromobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12412

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q4_01_M00932 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.22 ARWAAANAAAA NA 380000 TTTTARAAACA V$MEF2_04_M00233

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.48 CGGNNCCG NA NA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.38 GTCNGT NA NA 0.64 GCTGACTG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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