TargetScan_175 megaCluster: 7 Residual: 0.18 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_175	7	0.18	15	0	0.940166	0

Members

Displaying 1 - 24 of 24

18415 heat shock protein 4 like Details for - - heat shock protein 4 like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18415 Tuberculist Genomic Region	22591 xeroderma pigmentosum, complementation group C Details for - - xeroderma pigmentosum, complementation group C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22591 Tuberculist Genomic Region
226646 NADH dehydrogenase (ubiquinone) Fe-S protein 2 Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226646 Tuberculist Genomic Region	382010 centrosomal protein 44 Details for - - centrosomal protein 44 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 382010 Tuberculist Genomic Region
74044 transcription termination factor, RNA polymerase II Details for DN-358O3.2 - transcription termination factor, RNA polymerase II GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74044 Tuberculist Genomic Region	74764 kinesin light chain 4 Details for - - kinesin light chain 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74764 Tuberculist Genomic Region
105513 charged multivesicular body protein 7 Details for - - charged multivesicular body protein 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105513 Tuberculist Genomic Region	109900 argininosuccinate lyase Details for - - argininosuccinate lyase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109900 Tuberculist Genomic Region
12183 2,3-bisphosphoglycerate mutase Details for - - 2,3-bisphosphoglycerate mutase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12183 Tuberculist Genomic Region	16351 IAP promoted placental gene Details for RP23-233B9.2 - IAP promoted placental gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16351 Tuberculist Genomic Region
17268 Meis homeobox 1 Details for RP23-377H12.3 - Meis homeobox 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17268 Tuberculist Genomic Region	17939 N-acetyl galactosaminidase, alpha Details for - - N-acetyl galactosaminidase, alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17939 Tuberculist Genomic Region
19364 RAD51 homolog D Details for RP23-169P3.1 - RAD51 homolog D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19364 Tuberculist Genomic Region	22643 zinc finger protein 101 Details for - - zinc finger protein 101 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22643 Tuberculist Genomic Region
22719 zinc finger protein 61 Details for - - zinc finger protein 61 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22719 Tuberculist Genomic Region	227620 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 Details for RP23-47P18.3 - UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227620 Tuberculist Genomic Region
228983 oxysterol binding protein-like 2 Details for RP23-16P3.1 - oxysterol binding protein-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 228983 Tuberculist Genomic Region	230514 leptin receptor overlapping transcript Details for RP23-31K16.1 - leptin receptor overlapping transcript GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230514 Tuberculist Genomic Region
236193 zinc finger protein 709 Details for - - zinc finger protein 709 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 236193 Tuberculist Genomic Region	53975 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 Details for - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53975 Tuberculist Genomic Region
66822 F-box protein 25 Details for - - F-box protein 25 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66822 Tuberculist Genomic Region	67015 coiled-coil domain containing 91 Details for RP23-298K1.1 - coiled-coil domain containing 91 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67015 Tuberculist Genomic Region
69596 adaptor-related protein 5 complex, sigma 1 subunit Details for RP23-387C21.2 - adaptor-related protein 5 complex, sigma 1 subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 69596 Tuberculist Genomic Region	73739 chibby homolog 1 (Drosophila) Details for - - chibby homolog 1 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73739 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
GABPA_MA0062.2	0.625	0.0000019

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
510	AANAAAAGAAA	NA	12000	CCTTCTTGYT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.48	CGCGAA	V$E2F_Q6_M00427, V$E2F_01_M00024, V$E2F1_Q6_01_M00940, V$E2F_Q4_M00426, V$E2F_Q3_M00425, V$E2F1_Q6_M00431, V$E2F_Q3_01_M00918, V$E2F4DP1_01_M00738, V$E2F_Q4_02_M00939, V$E2F_02_M00050, V$E2F1DP1RB_01_M00740, V$E2F_03_M00516, V$E2F_Q4_01_M00919	1.53	GCGTCCGC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.73	GATGCG	NA	NA	0.82	CGAATGNG	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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