TargetScan_2 megaCluster: 3 Residual: 0.12 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_2	3	0.12	15	0	0.974638	0

Members

Displaying 1 - 27 of 27

100502606 predicted gene, 19279 Details for - - predicted gene, 19279 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100502606 Tuberculist Genomic Region	102857 solute carrier family 6 (neurotransmitter transporter, creatine), member 8 Details for RP23-329M9.4 - solute carrier family 6 (neurotransmitter transporter, creatine), member 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102857 Tuberculist Genomic Region
114644 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 Details for RP23-395E18.3 - solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 114644 Tuberculist Genomic Region	15959 interferon-induced protein with tetratricopeptide repeats 3 Details for - - interferon-induced protein with tetratricopeptide repeats 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15959 Tuberculist Genomic Region
16365 immunoresponsive gene 1 Details for - - immunoresponsive gene 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16365 Tuberculist Genomic Region	16948 lysyl oxidase Details for - - lysyl oxidase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16948 Tuberculist Genomic Region
170625 sorting nexin 18 Details for - - sorting nexin 18 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170625 Tuberculist Genomic Region	17931 protein phosphatase 1, regulatory (inhibitor) subunit 12A Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 12A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17931 Tuberculist Genomic Region
18036 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18036 Tuberculist Genomic Region	212167 gamma-secretase activating protein Details for - - gamma-secretase activating protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212167 Tuberculist Genomic Region
21825 thrombospondin 1 Details for RP23-234E8.1 - thrombospondin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21825 Tuberculist Genomic Region	225028 mitogen-activated protein kinase kinase kinase kinase 3 Details for - - mitogen-activated protein kinase kinase kinase kinase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 225028 Tuberculist Genomic Region
226442 zinc finger protein 281 Details for - - zinc finger protein 281 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226442 Tuberculist Genomic Region	226695 interferon activated gene 205 Details for - - interferon activated gene 205 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226695 Tuberculist Genomic Region
22680 zinc finger protein 207 Details for RP23-252E4.3 - zinc finger protein 207 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22680 Tuberculist Genomic Region	231713 N(alpha)-acetyltransferase 25, NatB auxiliary subunit Details for - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 231713 Tuberculist Genomic Region
399558 fibronectin leucine rich transmembrane protein 2 Details for - - fibronectin leucine rich transmembrane protein 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 399558 Tuberculist Genomic Region	66102 chemokine (C-X-C motif) ligand 16 Details for DN-491F10.6 - chemokine (C-X-C motif) ligand 16 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66102 Tuberculist Genomic Region
68427 solute carrier family 39 (metal ion transporter), member 13 Details for RP23-263H8.2 - solute carrier family 39 (metal ion transporter), member 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68427 Tuberculist Genomic Region	75345 SLAM family member 7 Details for - - SLAM family member 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 75345 Tuberculist Genomic Region
77987 activating signal cointegrator 1 complex subunit 3 Details for - - activating signal cointegrator 1 complex subunit 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 77987 Tuberculist Genomic Region	20354 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D Details for - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20354 Tuberculist Genomic Region
21923 tenascin C Details for RP24-144L11.1 - tenascin C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21923 Tuberculist Genomic Region	230073 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 Details for RP23-9F23.2 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 230073 Tuberculist Genomic Region
623121 pyrin domain containing 4 Details for - - pyrin domain containing 4 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 623121 Tuberculist Genomic Region	98999 zinc finger, NFX1-type containing 1 Details for RP23-19L12.5 - zinc finger, NFX1-type containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 98999 Tuberculist Genomic Region
14747 chemokine-like receptor 1 Details for - - chemokine-like receptor 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14747 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
NA

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.00000000013	AAAAANAAAAMA	NA	1200	AGGMAATYGAAA	STAT1_MA0137.1, IRF2_MA0051.1, IRF1_MA0050.1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.98	GCGCCA	V$E2F4_04_M02847, V$E2F2_04_M02846, E2F3.2, E2F2.2, E2F3.1, E2F2.1, Smad3.1, E2F1_E2F_DBD_monomeric_14_1, E2F1_E2F_DBD_dimeric_12_1, E2F1_E2F_DBD_monomeric_14_2, E2F2_E2F_DBD_dimeric_18_1, E2F2_E2F_DBD_dimeric_16_1, E2F4_E2F_DBD_dimeric_12_2, E2F3_E2F_DBD_dimeric_18_3, CTCF_C2H2_full_monomeric_17_1, E2F3_E2F_DBD_dimeric_18_2	1.08	GTCGCGAC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.63	GCAACG	NA	NA	0.89	CCCAANGT	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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