TargetScan_50 megaCluster: 3 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_50 3 0.21 15 0 0.920765 0

Members

Displaying 1 - 42 of 42
109754 cytochrome b5 reductase 3

Details for - - cytochrome b5 reductase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109754

Tuberculist Genomic Region

12488 CD2-associated protein

Details for - - CD2-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12488

Tuberculist Genomic Region

13424 dynein cytoplasmic 1 heavy chain 1

Details for - - dynein cytoplasmic 1 heavy chain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13424

Tuberculist Genomic Region

14182 fibroblast growth factor receptor 1

Details for - - fibroblast growth factor receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14182

Tuberculist Genomic Region

16323 inhibin beta-A

Details for - - inhibin beta-A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16323

Tuberculist Genomic Region

16969 zinc finger and BTB domain containing 7a

Details for - - zinc finger and BTB domain containing 7a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16969

Tuberculist Genomic Region

17470 CD200 antigen

Details for - - CD200 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17470

Tuberculist Genomic Region

17936 Ngfi-A binding protein 1

Details for - - Ngfi-A binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17936

Tuberculist Genomic Region

216080 ubiquitin-conjugating enzyme E2D 1

Details for - - ubiquitin-conjugating enzyme E2D 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216080

Tuberculist Genomic Region

21815 TGFB-induced factor homeobox 1

Details for - - TGFB-induced factor homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21815

Tuberculist Genomic Region

228543 ras homolog gene family, member V

Details for RP23-46P4.4 - ras homolog gene family, member V

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228543

Tuberculist Genomic Region

231549 leucine rich repeat containing 8D

Details for - - leucine rich repeat containing 8D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231549

Tuberculist Genomic Region

277203 transmembrane 4 L six family member 19

Details for - - transmembrane 4 L six family member 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277203

Tuberculist Genomic Region

382034 genetic suppressor element 1

Details for - - genetic suppressor element 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382034

Tuberculist Genomic Region

383435 membrane-spanning 4-domains, subfamily A, member 14

Details for - - membrane-spanning 4-domains, subfamily A, member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 383435

Tuberculist Genomic Region

387160 microRNA 142

Details for - - microRNA 142

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387160

Tuberculist Genomic Region

503610 zinc finger, DHHC domain containing 18

Details for RP23-137L22.12-001 - zinc finger, DHHC domain containing 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 503610

Tuberculist Genomic Region

56212 ras homolog gene family, member G

Details for - - ras homolog gene family, member G

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56212

Tuberculist Genomic Region

70661 SIK family kinase 3

Details for - - SIK family kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70661

Tuberculist Genomic Region

75202 sperm acrosome associated 6

Details for - - sperm acrosome associated 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75202

Tuberculist Genomic Region

76551 coiled-coil domain containing 6

Details for - - coiled-coil domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76551

Tuberculist Genomic Region

77975 transmembrane protein 50B

Details for - - transmembrane protein 50B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77975

Tuberculist Genomic Region

98366 small ArfGAP 1

Details for - - small ArfGAP 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98366

Tuberculist Genomic Region

12051 B cell leukemia/lymphoma 3

Details for - - B cell leukemia/lymphoma 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12051

Tuberculist Genomic Region

12153 bone morphogenetic protein 1

Details for - - bone morphogenetic protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12153

Tuberculist Genomic Region

16948 lysyl oxidase

Details for - - lysyl oxidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16948

Tuberculist Genomic Region

17395 matrix metallopeptidase 9

Details for RP23-61O3.10-001 - matrix metallopeptidase 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17395

Tuberculist Genomic Region

22680 zinc finger protein 207

Details for RP23-252E4.3 - zinc finger protein 207

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22680

Tuberculist Genomic Region

240328 RIKEN cDNA F830016B08 gene

Details for - - RIKEN cDNA F830016B08 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240328

Tuberculist Genomic Region

30839 F-box and WD-40 domain protein 5

Details for RP23-47P18.14-001 - F-box and WD-40 domain protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30839

Tuberculist Genomic Region

72027 polyhomeotic-like 2 (Drosophila)

Details for RP23-467J23.1 - polyhomeotic-like 2 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54383

Tuberculist Genomic Region

102857 solute carrier family 39 (zinc transporter), member 4

Details for - - solute carrier family 39 (zinc transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72027

Tuberculist Genomic Region

12266 solute carrier family 6 (neurotransmitter transporter, creatine), member 8

Details for RP23-329M9.4 - solute carrier family 6 (neurotransmitter transporter, creatine), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102857

Tuberculist Genomic Region

17931 complement component 3

Details for - - complement component 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12266

Tuberculist Genomic Region

21923 protein phosphatase 1, regulatory (inhibitor) subunit 12A

Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 12A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17931

Tuberculist Genomic Region

226976 tenascin C

Details for RP24-144L11.1 - tenascin C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21923

Tuberculist Genomic Region

234577 KAT8 regulatory NSL complex subunit 3

Details for - - KAT8 regulatory NSL complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226976

Tuberculist Genomic Region

399558 copine II

Details for - - copine II

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234577

Tuberculist Genomic Region

74919 fibronectin leucine rich transmembrane protein 2

Details for - - fibronectin leucine rich transmembrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 399558

Tuberculist Genomic Region

20530 solute carrier family 35, member F6

Details for - - solute carrier family 35, member F6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74919

Tuberculist Genomic Region

75345 solute carrier family 31, member 2

Details for RP23-64F17.2 - solute carrier family 31, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20530

Tuberculist Genomic Region

Details for - - SLAM family member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75345

Tuberculist Genomic Region

TFBS DB TF

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000000000022 AAAAAAAAMAAA NA 0.0049 TTTYNWANTCTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.97 AGCGCC NA 0.98 CCNGCGCC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.54 CGAGCC NA NA 0.62 GACGGGNG NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-342-5p 0.727273 0.00000845

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3094 0.459459 0.000000151

Add comment

Log in or register to post comments