Rv0302 TetR/ACRR family transcriptional regulator

Rv0302 (TetR/ACRR family transcriptional regulator) is predicted to be co-regulated in modules bicluster_0140 with residual 0.62 and bicluster_0493 with residual 0.66.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0140 and 0.02 and 25.00 for bicluster_0493 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 21 - 30 of 99
Gene Target Differential Expression Distance Expression pvalue Type
Possible membrane protein
No -73 -0.08 0.987371 Primary.TSS
Creatinine amidohydrolase (EC 3.5.2.10)
No -36 0.25 0.962042 Antisense.TSS
Sulfatase modifying factor 1 precursor (C-alpha-formyglycine- generating enzyme 1)
No 36 0.42 0.677774 Primary.TSS
LSU ribosomal protein L5p (L11e)
No 41 -0.05 0.989752 CDS
No -141 -0.16 0.952708 Primary.TSS
DNA-binding response regulator
No -9 -0.47 0.298119 Primary.TSS
Repressed -35 -1.03 0.0000141 Primary.TSS
Sensor protein basS/pmrB (EC 2.7.3.-)
No 68 0.43 0.780218 CDS
Transcriptional regulator, PadR family
No -73 0.19 0.985568 Primary.TSS
Lysine decarboxylase family
No 63 0.21 0.952708 Antisense.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.02 U
D3I 3 3 3.83 10.03 I
D3U 3 3 3.83 9.23 U
D5I 9 5 6.00 10.72 I
D5U 17 5 6.00 10.49 U
D7I 18 7 8.14 10.41 I
D7U 19 7 8.14 9.86 U
D14I 4 14 15.63 7.53 I
D14U 4 14 15.63 7.84 U
D17I 3 17 19.15 7.64 I
D17U 3 17 19.15 7.48 U
D21I 4 21 23.23 7.18 I
D21U 4 21 23.23 7.61 U
D24I 3 24 26.60 6.10 I
D24U 3 24 26.60 6.69 U
D28I 4 28 30.61 6.29 I
D28U 4 28 30.61 7.23 U