Rv1719 Transcriptional regulator, IclR family

Rv1719 (Transcriptional regulator, IclR family) is predicted to be co-regulated in modules bicluster_0221 with residual 0.50 and bicluster_0535 with residual 0.57.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 15.00 and 780.00 for bicluster_0221 and 11.00 and 3,000.00 for bicluster_0535 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 21 - 30 of 37
Gene Target Differential Expression Distance Expression pvalue Type
No 24 -0.54 0.374633 CDS
Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-)
No -69 0.2 0.741733 CDS
3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
No -31 -0.09 0.967609 Primary.TSS
Transcriptional regulator, IclR family
No -30 -0.33 0.817589 Primary.TSS
Transcriptional regulator, TetR family
No -10 -0.16 0.88719 Internal.TSS
Repressed -10 -0.87 0.00449414 Primary.TSS
Possible transmembrane protein
No -121 -0.28 0.773735 Antisense.TSS
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Repressed 18 -0.91 0.000000239 Primary.TSS
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) / Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)
No 55 -0.13 0.745656 Primary.TSS
YefM protein (antitoxin to YoeB)
No -69 0.53 0.708915 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D24I 3 24 26.60 12.97 I
D24U 3 24 26.60 14.64 U
D3I 3 3 3.83 15.20 I
D3U 3 3 3.83 15.11 U
D17I 3 17 19.15 14.18 I
D17U 3 17 19.15 15.08 U
D28I 4 28 30.61 12.41 I
D28U 4 28 30.61 14.30 U
D14I 4 14 15.63 14.78 I
D14U 4 14 15.63 15.14 U
D21I 4 21 23.23 13.69 I
D21U 4 21 23.23 14.67 U
D5I 9 5 6.00 13.05 I
D5U 17 5 6.00 13.15 U
D7I 18 7 8.14 14.40 I
D7U 19 7 8.14 14.60 U
D0U 27 0 0.00 14.97 U