Rv2034 Transcriptional regulator, ArsR family

Rv2034 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0120 with residual 0.55 and bicluster_0546 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0120 and 0.00 and 0.21 for bicluster_0546 respectively.

These modules are enriched for following go terms: nucleic acid binding transcription facto..., sequence-specific DNA binding transcript... .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 111 - 120 of 150
Gene Target Differential Expression Distance Expression pvalue Type
GCN5-related N-acetyltransferase, FIGfam019367
No 9 0 0.999274 Primary.TSS
KH domain RNA binding protein YlqC
No -125 0.18 0.524766 CDS
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)
No 46 -0.13 0.737455 CDS
COG1399 protein, clustered with ribosomal protein L32p
No -134 0.24 0.0174352 CDS
COG1399 protein, clustered with ribosomal protein L32p
No -98 0.24 0.0174352 Internal.TSS
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
No -56 0.21 0.452625 Primary.TSS
Methyltransferase (EC 2.1.1.-)
Repressed -62 -1.42 3.2e-16 Primary.TSS
Galactoside O-acetyltransferase (EC 2.3.1.18)
No 18 0 0.985521 Primary.TSS
No -48 -0.28 0.0737376 Primary.TSS
probable DNA-binding protein
No -124 -0.25 0.555172 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 10.48 U
D3I 3 3 3.83 10.74 I
D3U 3 3 3.83 10.88 U
D5I 9 5 6.00 8.69 I
D5U 17 5 6.00 10.11 U
D7I 18 7 8.14 6.93 I
D7U 19 7 8.14 9.41 U
D14I 4 14 15.63 2.80 I
D14U 4 14 15.63 9.76 U
D17I 3 17 19.15 I
D17U 3 17 19.15 9.50 U
D21I 4 21 23.23 2.16 I
D21U 4 21 23.23 9.28 U
D24I 3 24 26.60 I
D24U 3 24 26.60 9.11 U
D28I 4 28 30.61 I
D28U 4 28 30.61 8.90 U