Rv2250c Transcriptional regulator, TetR family

Rv2250c (Transcriptional regulator, TetR family) is predicted to be co-regulated in modules bicluster_0107 with residual 0.57 and bicluster_0461 with residual 0.55.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 3.30 and 320.00 for bicluster_0107 and 23.00 and 620.00 for bicluster_0461 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 152
Gene Target Differential Expression Distance Expression pvalue Type
Possible membrane protein
Repressed 7 -1.01 0.000000000000111 Primary.TSS
Possible membrane protein
No 45 -0.18 0.446349 Primary.TSS
MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)
No 59 -0.22 0.498168 Antisense.TSS
DNA-directed RNA polymerase beta subunit (EC 2.7.7.6)
No 35 0.02 0.963342 Primary.TSS
Acyl-CoA dehydrogenase (EC 1.3.99.3)
No -28 -0.47 0.1169 Primary.TSS
Translation elongation factor Tu
No 20 -0.15 0.748646 Primary.TSS
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
No -25 -0.49 0.082505 CDS
Creatinine amidohydrolase (EC 3.5.2.10)
No -96 0.19 0.701479 CDS
Creatinine amidohydrolase (EC 3.5.2.10)
No -120 0.19 0.701479 Internal.TSS
LSU ribosomal protein L15p (L27Ae)
No -93 -0.02 0.970162 Internal.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 10.01 U
D3I 3 3 3.83 9.38 I
D3U 3 3 3.83 9.58 U
D5I 9 5 6.00 11.08 I
D5U 17 5 6.00 12.64 U
D7I 18 7 8.14 7.09 I
D7U 19 7 8.14 9.43 U
D14I 4 14 15.63 4.67 I
D14U 4 14 15.63 6.80 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.89 U
D21I 4 21 23.23 2.16 I
D21U 4 21 23.23 5.60 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.14 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.35 U