Rv3227 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)

Summary

Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv3227 aroA 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) CDS 3603377 3604729 + 1 353 450 FALSE

Rv3227 (5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)) is predicted to be co-regulated in modules bicluster_0177 with residual 0.50 and bicluster_0208 with residual 0.56.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 3.10 and 110.00 for bicluster_0177 and 2,200.00 and 230.00 for bicluster_0208 respectively.

These modules are enriched for following go terms: glutamine metabolic process .

This gene is found to be for growth on cholesterol.

Mutant available?:

Product (LegacyBRC) Product (RefSeq)
3-phosphoshikimate 1-carboxyvinyltransferase 3-phosphoshikimate 1-carboxyvinyltransferase
Operon # Operon
2113 -
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Phenylalanine, tyrosine and tryptophan biosynthesis

18
Total items in this category:  

KEGG

Metabolic pathways

601
Total items in this category:  

KEGG

Biosynthesis of secondary metabolites

326
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610363 NP_217744.1 Run
GO:0003866

3-phosphoshikimate 1-carboxyvinyltransferase activity

3-phosphoshikimate 1-carboxyvinyltransferase activity

Details: 
Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
GO Category: 
molecular_function
1
Total items in this category:  
GO:0003866

3-phosphoshikimate 1-carboxyvinyltransferase activity

3-phosphoshikimate 1-carboxyvinyltransferase activity

Details: 
Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
GO Category: 
molecular_function
1
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
NA NA

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: