Genes
Species: Synechococcus elongatus PCC 7942
transcription factors: 90
Name | Common name | Type | Gene ID | Chromosome | Start | End | Strand | Description | TF |
---|---|---|---|---|---|---|---|---|---|
Synpcc7942_0090 | CDS | 3773430 | chromosome | 88735 | 89718 | + | "transcriptional regulator, GntR family (IMGterm)" | True | |
Synpcc7942_0095 | CDS | 3773435 | chromosome | 92590 | 93339 | - | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_0127 | CDS | 3773467 | chromosome | 126390 | 127058 | + | "transcriptional regulator, Crp/Fnr family (IMGterm)" | True | |
Synpcc7942_0426 | CDS | 3773371 | chromosome | 415535 | 416086 | - | condensin subunit ScpB (IMGterm) | True | |
Synpcc7942_0501 | CDS | 3774739 | chromosome | 488833 | 489483 | - | Nucleoside-diphosphate-sugar epimerase-like | True | |
Synpcc7942_0525 | aroB | CDS | 3774763 | chromosome | 509226 | 510332 | - | 3-dehydroquinate synthase (EC 4.2.3.4) (IMGterm) | True |
Synpcc7942_0556 | CDS | 3774794 | chromosome | 538506 | 539219 | - | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_0569 | CDS | 3774807 | chromosome | 550718 | 551653 | - | DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like | True | |
Synpcc7942_0599 | CDS | 3775317 | chromosome | 587802 | 588404 | - | "transcriptional regulator, TetR family (IMGterm)" | True | |
Synpcc7942_0616 | hrcA | CDS | 3775598 | chromosome | 606238 | 607299 | + | heat-inducible transcription repressor HrcA (IMGterm) | True |
Synpcc7942_0635 | nusG | CDS | 3775618 | chromosome | 626299 | 626916 | - | transcription antitermination protein nusG (IMGterm) | True |
Synpcc7942_0649 | CDS | 3775632 | chromosome | 642767 | 643966 | - | Sigma-70 factor | True | |
Synpcc7942_0672 | CDS | 3775655 | chromosome | 666887 | 667849 | + | group2 RNA polymerase sigma factor SigD | True | |
Synpcc7942_0677 | CDS | 3775660 | chromosome | 672082 | 672462 | - | "transcriptional regulator, PadR family (IMGterm)" | True | |
Synpcc7942_0688 | CDS | 3775858 | chromosome | 683722 | 684060 | + | "transcriptional regulator, ArsR family (IMGterm)" | True | |
Synpcc7942_0695 | CDS | 3775865 | chromosome | 688334 | 688840 | - | Protein of unknown function DUF193 | True | |
Synpcc7942_0725 | CDS | 3775896 | chromosome | 718666 | 720075 | + | DEAD/DEAH box helicase-like | True | |
Synpcc7942_0763 | CDS | 3775939 | chromosome | 756989 | 757318 | - | "transcriptional regulator, XRE family (IMGterm)" | True | |
Synpcc7942_0793 | CDS | 3775970 | chromosome | 788593 | 789261 | - | hypothetical protein | True | |
Synpcc7942_0794 | CDS | 3775971 | chromosome | 789460 | 790233 | - | membrane-associated 30 kD protein-like | True | |
Synpcc7942_0817 | CDS | 3775995 | chromosome | 812331 | 812723 | - | "putative ferric uptake regulator, FUR family" | True | |
Synpcc7942_0874 | CDS | 3774051 | chromosome | 874390 | 877449 | - | DEAD/DEAH box helicase-like | True | |
Synpcc7942_0938 | CDS | 3775325 | chromosome | 944220 | 944540 | + | "transcriptional regulator, ArsR family (IMGterm)" | True | |
Synpcc7942_0961 | CDS | 3775349 | chromosome | 968937 | 969950 | + | cell envelope-related function transcriptional attenuator common domain | True | |
Synpcc7942_0987 | CDS | 3775376 | chromosome | 996280 | 996723 | - | "putative ferric uptake regulator, FUR family" | True | |
Synpcc7942_1012 | CDS | 3773940 | chromosome | 1023969 | 1024742 | - | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_1017 | CDS | 3773945 | chromosome | 1031697 | 1032458 | - | Protein of unknown function DUF28 | True | |
Synpcc7942_1026 | CDS | 3773956 | chromosome | 1039971 | 1041725 | - | fibronectin binding protein-like | True | |
Synpcc7942_1079 | CDS | 3775028 | chromosome | 1088698 | 1091151 | + | ATP-dependent DNA helicase RecG (EC 3.6.1.-) (IMGterm) | True | |
Synpcc7942_1094 | CDS | 3775044 | chromosome | 1111918 | 1112535 | - | "putative transcriptional activator, TenA family (EC:3.5.99.2)" | True | |
Synpcc7942_1110 | CDS | 3775060 | chromosome | 1126901 | 1127527 | + | response regulator receiver domain protein (CheY-like) | True | |
Synpcc7942_1159 | CDS | 3775109 | chromosome | 1192792 | 1193292 | - | "transcriptional regulator, MarR family (IMGterm)" | True | |
Synpcc7942_1242 | CDS | 3773530 | chromosome | 1266128 | 1267057 | + | "transcriptional regulator, LysR family (IMGterm)" | True | |
Synpcc7942_1291 | CDS | 3773580 | chromosome | 1313561 | 1313929 | + | "transcriptional regulator, ArsR family (IMGterm)" | True | |
Synpcc7942_1310 | CDS | 3775503 | chromosome | 1337076 | 1338047 | + | ndhF3 operon transcriptional regulator | True | |
Synpcc7942_1326 | CDS | 3775519 | chromosome | 1357232 | 1360693 | + | transcription-repair coupling factor (IMGterm) | True | |
Synpcc7942_1360 | CDS | 3775553 | chromosome | 1399742 | 1401052 | + | cell envelope-related transcriptional attenuator (IMGterm) | True | |
Synpcc7942_1377 | CDS | 3775571 | chromosome | 1417540 | 1419879 | + | metal dependent phosphohydrolase (IMGterm) | True | |
Synpcc7942_1404 | CDS | 3774117 | chromosome | 1455395 | 1456084 | - | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_1439 | CDS | 3773611 | chromosome | 1492429 | 1494030 | - | NADH dehydrogenase subunit M (EC 1.6.5.3) (IMGterm) | True | |
Synpcc7942_1453 | CDS | 3773625 | chromosome | 1506399 | 1507133 | + | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_1465 | CDS | 3773637 | chromosome | 1518994 | 1519449 | + | "transcriptional regulator, BadM/Rrf2 family (IMGterm)" | True | |
Synpcc7942_1510 | CDS | 3774934 | chromosome | 1560399 | 1561178 | - | "RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG (IMGterm)" | True | |
Synpcc7942_1522 | rpoB | CDS | 3774946 | chromosome | 1573729 | 1577031 | + | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (IMGterm) | True |
Synpcc7942_1523 | CDS | 3774947 | chromosome | 1577150 | 1579024 | + | DNA-directed RNA polymerase gamma chain (EC 2.7.7.6) (IMGterm) | True | |
Synpcc7942_1524 | CDS | 3774948 | chromosome | 1579094 | 1583050 | + | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (IMGterm) | True | |
Synpcc7942_1527 | CDS | 3774951 | chromosome | 1586243 | 1588759 | + | nitrogen assimilation regulatory protein | True | |
Synpcc7942_1549 | CDS | 3774973 | chromosome | 1606129 | 1606689 | + | SOS response UmuD protein. Serine peptidase. MEROPS family S24 (IMGterm) | True | |
Synpcc7942_1557 | CDS | 3774981 | chromosome | 1613464 | 1614396 | - | principal RNA polymerase sigma factor SigA | True | |
Synpcc7942_1648 | CDS | 3775719 | chromosome | 1716189 | 1716638 | - | "putative ferric uptake regulator, FUR family" | True | |
Synpcc7942_1684 | CDS | 3775383 | chromosome | 1751336 | 1751956 | + | "putative transcriptional regulator, Crp/Fnr family" | True | |
Synpcc7942_1698 | CDS | 3775397 | chromosome | 1765087 | 1765428 | + | putative transcriptional regulator | True | |
Synpcc7942_1725 | CDS | 3775425 | chromosome | 1797616 | 1799067 | + | "transcriptional regulator, GntR family (IMGterm)" | True | |
Synpcc7942_1733 | CDS | 3775433 | chromosome | 1803575 | 1804219 | - | transcriptional regulator (IMGterm) | True | |
Synpcc7942_1739 | CDS | 3775439 | chromosome | 1809717 | 1810142 | + | "transcriptional regulator, MerR family (IMGterm)" | True | |
Synpcc7942_1746 | CDS | 3775446 | chromosome | 1816600 | 1817562 | - | group2 RNA polymerase sigma factor SigB | True | |
Synpcc7942_1784 | CDS | 3774359 | chromosome | 1852529 | 1853311 | + | "RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG (IMGterm)" | True | |
Synpcc7942_1803 | CDS | 3774378 | chromosome | 1873351 | 1873782 | - | "putative ferric uptake regulator, FUR family" | True | |
Synpcc7942_1808 | CDS | 3774383 | chromosome | 1876216 | 1876959 | - | "putative transcriptional acitvator, Baf (EC:2.7.1.33)" | True | |
Synpcc7942_1815 | CDS | 3774390 | chromosome | 1887216 | 1888451 | - | response regulator receiver domain protein (CheY-like) | True | |
Synpcc7942_1849 | CDS | 3774424 | chromosome | 1916620 | 1917816 | + | "RNA polymerase, sigma subunit, RpsC/SigC (IMGterm)" | True | |
Synpcc7942_1860 | CDS | 3775223 | chromosome | 1930475 | 1931182 | - | "two component transcriptional regulator, LuxR family (IMGterm)" | True | |
Synpcc7942_1873 | CDS | 3775236 | chromosome | 1945396 | 1946076 | + | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_1911 | CDS | 3775274 | chromosome | 1986376 | 1988613 | - | RNAse R (EC 3.1.-.-) (IMGterm) | True | |
Synpcc7942_1923 | CDS | 3775286 | chromosome | 1999240 | 1999896 | - | "RNA polymerase, sigma subunit, ECF family (IMGterm)" | True | |
Synpcc7942_1958 | CDS | 3774143 | chromosome | 2029762 | 2030133 | - | hypothetical protein | True | |
Synpcc7942_1980 | CDS | 3774167 | chromosome | 2050905 | 2051894 | + | "transcriptional regulator, LysR family (IMGterm)" | True | |
Synpcc7942_2004 | CDS | 3774191 | chromosome | 2073028 | 2073618 | + | sigma-24 (FecI-like) | True | |
Synpcc7942_2021 | CDS | 3774208 | chromosome | 2090088 | 2090381 | - | hypothetical protein | True | |
Synpcc7942_2022 | nusA | CDS | 3774209 | chromosome | 2090378 | 2091703 | - | NusA antitermination factor (IMGterm) | True |
Synpcc7942_2094 | CDS | 3774313 | chromosome | 2176209 | 2176610 | + | Beta-Ig-H3/fasciclin | True | |
Synpcc7942_2111 | CDS | 3774330 | chromosome | 2192025 | 2192933 | + | xylose repressor (EC:2.7.1.2) | True | |
Synpcc7942_2170 | CDS | 3773727 | chromosome | 2251548 | 2251997 | + | "putative ferric uptake regulator, FUR family" | True | |
Synpcc7942_2174 | CDS | 3773731 | chromosome | 2253875 | 2254504 | + | "putative transcriptional regulator, Crp/Fnr family" | True | |
Synpcc7942_2209 | CDS | 3773767 | chromosome | 2286806 | 2287735 | - | DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6) (IMGterm) | True | |
Synpcc7942_2264 | CDS | 3774546 | chromosome | 2332654 | 2332929 | - | "transcriptional regulator, LuxR family (IMGterm)" | True | |
Synpcc7942_2305 | CDS | 3774588 | chromosome | 2373315 | 2374001 | + | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_2356 | CDS | 3774639 | chromosome | 2422193 | 2422819 | - | "transcriptional regulator, Crp/Fnr family (IMGterm)" | True | |
Synpcc7942_2416 | CDS | 3774700 | chromosome | 2488440 | 2489207 | - | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_2418 | CDS | 3774702 | chromosome | 2490633 | 2491517 | - | transcriptional regulator (IMGterm) | True | |
Synpcc7942_2425 | CDS | 3774709 | chromosome | 2497699 | 2498661 | - | chaperon-like protein for quinone binding in photosystem II | True | |
Synpcc7942_2466 | CDS | 3774486 | chromosome | 2546850 | 2547557 | + | "two component transcriptional regulator, winged helix family (IMGterm)" | True | |
Synpcc7942_2471 | nusB | CDS | 3774491 | chromosome | 2552611 | 2553252 | + | transcription antitermination factor NusB | True |
Synpcc7942_2473 | CDS | 3774493 | chromosome | 2555003 | 2556391 | + | serine phosphatase (IMGterm) | True | |
Synpcc7942_2552 | CDS | 3775145 | chromosome | 2632134 | 2632862 | - | hydrogenase accessory protein HypB | True | |
Synpcc7942_2585 | CDS | 3775181 | chromosome | 2669713 | 2670228 | - | "transcriptional regulator, BadM/Rrf2 family (IMGterm)" | True | |
Synpcc7942_B2618 | CDS | 3772766 | plasmid | 9947 | 10381 | + | "transcriptional regulator, BadM/Rrf2 family (IMGterm)" | True | |
Synpcc7942_B2644 | CDS | 3772725 | plasmid | 38521 | 39228 | + | response regulator receiver domain protein (CheY-like) | True | |
Synpcc7942_B2647 | CDS | 3772728 | plasmid | 41755 | 42429 | - | response regulator receiver domain protein (CheY-like) | True | |
Synpcc7942_B2651 | CDS | 3772732 | plasmid | 44779 | 45741 | - | integrase/recombinase | True |