Explore network modules for Synechococcus elongatus PCC 7942

Use residual and motif e-value sliders to filter modules

Residual: 0-0.3 Motif e-value 0-10
This is the section to display the module list


Synpcc7942_0090 Synpcc7942_0095 Synpcc7942_0127 Synpcc7942_0426 Synpcc7942_0501 Synpcc7942_0525 aroB Synpcc7942_0556 Synpcc7942_0569 Synpcc7942_0599 Synpcc7942_0616 hrcA Synpcc7942_0635 nusG Synpcc7942_0649 Synpcc7942_0672 Synpcc7942_0677 Synpcc7942_0688 Synpcc7942_0695 Synpcc7942_0725 Synpcc7942_0763 Synpcc7942_0793 Synpcc7942_0794 Synpcc7942_0817 Synpcc7942_0874 Synpcc7942_0938 Synpcc7942_0961 Synpcc7942_0987 Synpcc7942_1012 Synpcc7942_1017 Synpcc7942_1026 Synpcc7942_1079 Synpcc7942_1094 Synpcc7942_1110 Synpcc7942_1159 Synpcc7942_1242 Synpcc7942_1291 Synpcc7942_1310 Synpcc7942_1326 Synpcc7942_1360 Synpcc7942_1377 Synpcc7942_1404 Synpcc7942_1439 Synpcc7942_1453 Synpcc7942_1465 Synpcc7942_1510 Synpcc7942_1522 rpoB Synpcc7942_1523 Synpcc7942_1524 Synpcc7942_1527 Synpcc7942_1549 Synpcc7942_1557 Synpcc7942_1648 Synpcc7942_1684 Synpcc7942_1698 Synpcc7942_1725 Synpcc7942_1733 Synpcc7942_1739 Synpcc7942_1746 Synpcc7942_1784 Synpcc7942_1803 Synpcc7942_1808 Synpcc7942_1815 Synpcc7942_1849 Synpcc7942_1860 Synpcc7942_1873 Synpcc7942_1911 Synpcc7942_1923 Synpcc7942_1958 Synpcc7942_1980 Synpcc7942_2004 Synpcc7942_2021 Synpcc7942_2022 nusA Synpcc7942_2094 Synpcc7942_2111 Synpcc7942_2170 Synpcc7942_2174 Synpcc7942_2209 Synpcc7942_2264 Synpcc7942_2305 Synpcc7942_2356 Synpcc7942_2416 Synpcc7942_2418 Synpcc7942_2425 Synpcc7942_2466 Synpcc7942_2471 nusB Synpcc7942_2473 Synpcc7942_2552 Synpcc7942_2585 Synpcc7942_B2618 Synpcc7942_B2644 Synpcc7942_B2647 Synpcc7942_B2651
Network Exploration Help

This page gives you overview of the network modules for a particular organism. You can explore these modules by using various filters.

Currently we support two filters, Residual and Motif e-values. Network modules are loaded with default residual and motif e-value filters. In order to change filters, simply move the slider to select the desired range. Results table will automatically update to reflect your filter selections. If you would like to remove filters, click on "Reset Filters" button.

Network Table

Network table will show the following columns for each module.

Module: Number of the module for the given version of the network.

Residual: is a measure of bicluster quality. Mean bicluster residual is smaller when the expression profile of the genes in the module is "tighter". So smaller residuals are usually indicative of better bicluster quality.

Expression Profile: is a preview of the expression profiles of all the genes under subset of conditions included in the module. Tighter expression profiles are usually indicative of better bicluster quality.

Motif e-value: cMonkey tries to identify two motifs per modules in the upstream sequences of the module member genes. Motif e-value is an indicative of the motif co-occurences between the members of the module.Smaller e-values are indicative of significant sequence motifs. Our experience showed that e-values smaller than 10 are generally indicative of significant motifs.

Genes: Number of genes included in the module.

Functions: We identify functional enrichment of each module by camparing to different functional categories such as KEGG, COG, GO etc. by using hypergeometric function. If the module is significantly enriched for any of the functions, this column will list few of the these functions as an overview. Full list of functions is available upon visiting the module page under the Functions tab.


Inferelator algorithm identifies most probable regulatory influences for each module. These influences can be transcription factors or environmental factors. Influences section lists all the regulators that have influences on modules. Click on the regulator name If you would like to access which modules are regulated by these regulators.