DVU3023 DVU3023 Sigma-54 dependent DNA-binding response regulator

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Desulfovibrio vulgaris Hildenborough

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Summary

Locus Tag Synonyms Product Protein Synonyms Start End Strand PubMed ID
DVU3023 DVU3023 DVU3023 Sigma-54 dependent DNA-binding response regulator Sigma-54 dependent DNA-binding response regulator 3141933 3143357 + 15077118

Regulatory Modules

Residual Expression Plot
bicluster_0023 0.47

XReference

Uniprot NCBI Gene NCBI Protein GI Number MicrobesOnline EnsemblBacteria InterPro EggNOG OrthoDB
Q726T3 2796440 YP_012234.1; 46581426 208537 AAS97494 IPR003593, IPR011006, IPR027417, IPR001789, IPR002078, IPR025662, IPR025943 COG2204 EOG6WHNMG

Mutations

Line Position Effect Impact Class Percent Frequency Sample Title
US1 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 EG_US1_15 Chr-DVU3023-3142198-EG_US1_15
HR2 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 HR2.152.01.D02 Chr-DVU3023-3142198-HR2.152.01.D02
HA2 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 EP_HA2_05 Chr-DVU3023-3142198-EP_HA2_05
UE3 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 UE3.152.03.D02 Chr-DVU3023-3142198-UE3.152.03.D02
HR2 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 HR2.152.05.D01 Chr-DVU3023-3142198-HR2.152.05.D01
HA2 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 HA2.152.05.D03 Chr-DVU3023-3142198-HA2.152.05.D03
UR1 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 EG_UR1_118 Chr-DVU3023-3142198-EG_UR1_118
Coculture-Ancestor 3 142 198 NON_SYNONYMOUS_CODING MISSENSE AN_Coculture-Ancestor Chr-DVU3023-3142198-AN_Coculture-Ancestor
HR1 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 TG_HR1 Chr-DVU3023-3142198-TG_HR1
HA2 3 142 198 NON_SYNONYMOUS_CODING MISSENSE 100 HA2.152.01.D03 Chr-DVU3023-3142198-HA2.152.01.D03

Transposon mutants

Title Insert TAG Module
BCD1228 del
DVU3023

Homology

Orthologues Paralogues

Functions

COG
(T) COG2204 | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Essentiality

WT.MOLS4 WT.MOLS4_NO3 WT.MOYLS4.1 WT.MOYLS4.2
0.55 0.01 0.35 0.22

Product Synonyms

Product (LegacyBRC) Product (RefSeq)

Operon

Refseq

GI Number Accession Blast Conserved Domains
46581426 YP_012234.1 Run

GO Terms

String Network

Link to STRINGS STRINGS Network
DVU3023

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