Desulfovibrio vulgaris Hildenborough Module 23 Residual: 0.47

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Summary

Residual: 0.47 Score: -40.4034 version: dvh_cmonkey_11_Mar_02

Members

DVU0348 Uncharacterized protein

Details for DVU0348 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0348

Tuberculist Genomic Region

DVU1929 Uncharacterized protein

Details for DVU1929 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1929

Tuberculist Genomic Region

DVU0487 N5-carboxyaminoimidazole ribonucleotide mutase

Details for DVU0487 - N5-carboxyaminoimidazole ribonucleotide mutase

GO Terms: GO:0006189, GO:0034023, GO:0016829

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0487

Tuberculist Genomic Region

DVU1930 TPR domain protein

Details for DVU1930 - TPR domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1930

Tuberculist Genomic Region

DVU0646 Precorrin-2 C20-methyltransferase

Details for DVU0646 - Precorrin-2 C20-methyltransferase

GO Terms: GO:0009236, GO:0030788

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0646

Tuberculist Genomic Region

DVU2322 UTP--glucose-1-phosphate uridylyltransferase, putative

Details for DVU2322 - UTP--glucose-1-phosphate uridylyltransferase, putative

GO Terms: GO:0006011, GO:0003983

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2322

Tuberculist Genomic Region

DVU0647 Iron compound ABC transporter, periplasmic iron compount-binding protein, putative

Details for DVU0647 - Iron compound ABC transporter, periplasmic iron compount-binding protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0647

Tuberculist Genomic Region

DVU2463 DNA repair protein RecN

Details for DVU2463 - DNA repair protein RecN

GO Terms: GO:0005524, GO:0006310, GO:0006281

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2463

Tuberculist Genomic Region

DVU0648 Iron compound ABC transporter, ATP-binding protein

Details for DVU0648 - Iron compound ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0648

Tuberculist Genomic Region

DVU2464 Uncharacterized protein

Details for DVU2464 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2464

Tuberculist Genomic Region

DVU0649 Iron compound ABC transporter, permease protein

Details for DVU0649 - Iron compound ABC transporter, permease protein

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0649

Tuberculist Genomic Region

DVU3023 Sigma-54 dependent DNA-binding response regulator

Details for DVU3023 - Sigma-54 dependent DNA-binding response regulator

GO Terms: GO:0005524, GO:0003677, GO:0000160, GO:0006355, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3023

Tuberculist Genomic Region

DVU0650 Sirohydrochlorin cobaltochelatase CbiKP

Details for DVU0650 - Sirohydrochlorin cobaltochelatase CbiKP

GO Terms: GO:0019251, GO:0050897, GO:0020037, GO:0042597, GO:0051262, GO:0016852, GO:0051266

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0650

Tuberculist Genomic Region

DVU3154 Non-canonical purine NTP pyrophosphatase

Details for DVU3154 - Non-canonical purine NTP pyrophosphatase

GO Terms: GO:0046872, GO:0009143, GO:0017111, GO:0047429, GO:0000166, GO:0006163

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3154

Tuberculist Genomic Region

DVU0843 Uncharacterized protein

Details for DVU0843 - Uncharacterized protein

GO Terms: GO:0016765

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0843

Tuberculist Genomic Region

DVU3161 ABC transporter, ATP-binding protein

Details for DVU3161 - ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0043190, GO:0016887, GO:0016820

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3161

Tuberculist Genomic Region

DVU0988 Carbohydrate kinase, PfkB family

Details for DVU0988 - Carbohydrate kinase, PfkB family

GO Terms: GO:0016301, GO:0016773

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0988

Tuberculist Genomic Region

DVU3168 Glutamate-1-semialdehyde 2,1-aminomutase

Details for DVU3168 - Glutamate-1-semialdehyde 2,1-aminomutase

GO Terms: GO:0005737, GO:0042286, GO:0006782, GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3168

Tuberculist Genomic Region

DVU0990 Endonuclease III

Details for DVU0990 - Endonuclease III

GO Terms: GO:0051539, GO:0019104, GO:0003677, GO:0003906, GO:0006284, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0990

Tuberculist Genomic Region

DVU3198 DNA polymerase III, gamma and tau subunits, putative

Details for DVU3198 - DNA polymerase III, gamma and tau subunits, putative

GO Terms: GO:0005524, GO:0003677, GO:0009360, GO:0006260, GO:0003887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3198

Tuberculist Genomic Region

DVU0991 Uncharacterized protein

Details for DVU0991 - Uncharacterized protein

GO Terms: GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0991

Tuberculist Genomic Region

DVU3199 Nucleoid-associated protein DVU_3199

Details for DVU3199 - Nucleoid-associated protein DVU_3199

GO Terms: GO:0003677, GO:0043590, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3199

Tuberculist Genomic Region

DVU1039 Lipoprotein, putative

Details for DVU1039 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1039

Tuberculist Genomic Region

DVU3200 Recombination protein RecR

Details for DVU3200 - Recombination protein RecR

GO Terms: GO:0003677, GO:0006310, GO:0006281, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3200

Tuberculist Genomic Region

DVU1040 Imidazoleglycerol-phosphate dehydratase

Details for DVU1040 - Imidazoleglycerol-phosphate dehydratase

GO Terms: GO:0005737, GO:0000105, GO:0004424

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1040

Tuberculist Genomic Region

DVU0084 Methylthioribose-1-phosphate isomerase

Details for DVU0084 - Methylthioribose-1-phosphate isomerase

GO Terms: GO:0019284, GO:0019509, GO:0046523

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0084

Tuberculist Genomic Region

DVU1927 Isoleucine--tRNA ligase

Details for DVU1927 - Isoleucine--tRNA ligase

GO Terms: GO:0005524, GO:0002161, GO:0005737, GO:0004822, GO:0006428, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1927

Tuberculist Genomic Region

Displaying 1 - 27 of 27

Motifs

Motif 1: e-value: 17 e-value: 6.5

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0057

Transcriptional regulator, TetR family
 down-regulates -0.10

DVU0057

DVU0596

DNA-binding response regulator LytR
 down-regulates -0.14

DVU0596

DVU1561

Molybdenum-binding protein, HTH domain
 down-regulates -0.14

DVU1561

DVU3095

Transcriptional regulator, Fur family
 down-regulates -0.14

DVU3095

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0044281 small molecule metabolic process 88 1.19 5 0.0007
BP GO:0034641 cellular nitrogen compound metabolic pro... 92 1.25 5 0.0009
BP GO:0006725 cellular aromatic compound metabolic pro... 94 1.27 5 0.0010
BP GO:0046483 heterocycle metabolic process 98 1.33 5 0.0012
BP GO:1901360 organic cyclic compound metabolic proces... 101 1.37 5 0.0014
BP GO:0044710 single-organism metabolic process 124 1.68 5 0.0041
BP GO:0006807 nitrogen compound metabolic process 127 1.72 5 0.0046
BP GO:1901566 organonitrogen compound biosynthetic pro... 68 0.92 4 0.0046
BP GO:0044283 small molecule biosynthetic process 31 0.42 3 0.0048
BP GO:0044711 single-organism biosynthetic process 82 1.11 4 0.0095
BP GO:0006766 vitamin metabolic process 13 0.18 2 0.0108
BP GO:0006767 water-soluble vitamin metabolic process 13 0.18 2 0.0108
BP GO:0009110 vitamin biosynthetic process 13 0.18 2 0.0108
BP GO:0009235 cobalamin metabolic process 13 0.18 2 0.0108
BP GO:0009236 cobalamin biosynthetic process 13 0.18 2 0.0108
BP GO:0042364 water-soluble vitamin biosynthetic proce... 13 0.18 2 0.0108
BP GO:1901564 organonitrogen compound metabolic proces... 86 1.17 4 0.0115
BP GO:0055086 nucleobase-containing small molecule met... 42 0.57 3 0.0117
BP GO:0033013 tetrapyrrole metabolic process 14 0.19 2 0.0126
BP GO:0033014 tetrapyrrole biosynthetic process 14 0.19 2 0.0126
BP GO:0044237 cellular metabolic process 163 2.21 5 0.0163
BP GO:1901135 carbohydrate derivative metabolic proces... 49 0.66 3 0.0182
BP GO:0044249 cellular biosynthetic process 98 1.33 4 0.0189
BP GO:1901576 organic substance biosynthetic process 102 1.38 4 0.0220
BP GO:0071704 organic substance metabolic process 177 2.40 5 0.0247
BP GO:0072521 purine-containing compound metabolic pro... 21 0.28 2 0.0278
BP GO:0044271 cellular nitrogen compound biosynthetic ... 60 0.81 3 0.0322
BP GO:0019438 aromatic compound biosynthetic process 61 0.83 3 0.0337
BP GO:0044763 single-organism cellular process 194 2.63 5 0.0392
BP GO:0000096 sulfur amino acid metabolic process 3 0.04 1 0.0402
BP GO:0000097 sulfur amino acid biosynthetic process 3 0.04 1 0.0402
BP GO:0043094 cellular metabolic compound salvage 3 0.04 1 0.0402
BP GO:0018130 heterocycle biosynthetic process 67 0.91 3 0.0436
BP GO:1901362 organic cyclic compound biosynthetic pro... 70 0.95 3 0.0491

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