Desulfovibrio vulgaris Hildenborough Module 18 Residual: 0.44

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Summary

Residual: 0.44 Score: -45.3649 version: dvh_cmonkey_11_Mar_02

Members

DVU0004 DNA gyrase subunit A

Details for DVU0004 - DNA gyrase subunit A

GO Terms: GO:0005524, GO:0003677, GO:0003918, GO:0006265, GO:0006261, GO:0005694, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0004

Tuberculist Genomic Region

DVU1257 RNA-binding protein

Details for DVU1257 - RNA-binding protein

GO Terms: GO:0003676, GO:0000166

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1257

Tuberculist Genomic Region

DVU0563 ISD1, transposase OrfB

Details for DVU0563 - ISD1, transposase OrfB

GO Terms: GO:0015074, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0563

Tuberculist Genomic Region

DVU1302 30S ribosomal protein S10

Details for DVU1302 - 30S ribosomal protein S10

GO Terms: GO:0005840, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1302

Tuberculist Genomic Region

DVU0835 50S ribosomal protein L19

Details for DVU0835 - 50S ribosomal protein L19

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0835

Tuberculist Genomic Region

DVU1334 Trigger factor

Details for DVU1334 - Trigger factor

GO Terms: GO:0007049, GO:0051301, GO:0005737, GO:0003755, GO:0006457, GO:0015031

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1334

Tuberculist Genomic Region

DVU0837 Ribosome maturation factor RimM

Details for DVU0837 - Ribosome maturation factor RimM

GO Terms: GO:0006364, GO:0042274, GO:0005840, GO:0043022

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0837

Tuberculist Genomic Region

DVU1676 Preprotein translocase, SecG subunit

Details for DVU1676 - Preprotein translocase, SecG subunit

GO Terms: GO:0015450, GO:0016021, GO:0009306

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1676

Tuberculist Genomic Region

DVU0838 UPF0109 protein DVU_0838

Details for DVU0838 - UPF0109 protein DVU_0838

GO Terms: GO:0003723

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0838

Tuberculist Genomic Region

DVU1792 30S ribosomal protein S21

Details for DVU1792 - 30S ribosomal protein S21

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1792

Tuberculist Genomic Region

DVU0839 30S ribosomal protein S16

Details for DVU0839 - 30S ribosomal protein S16

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0839

Tuberculist Genomic Region

DVU1931 Iron-sulfur cluster-binding protein

Details for DVU1931 - Iron-sulfur cluster-binding protein

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1931

Tuberculist Genomic Region

DVU0927 50S ribosomal protein L21

Details for DVU0927 - 50S ribosomal protein L21

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0927

Tuberculist Genomic Region

DVU2215 RNA-binding protein

Details for DVU2215 - RNA-binding protein

GO Terms: GO:0003676, GO:0000166

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2215

Tuberculist Genomic Region

DVU0928 50S ribosomal protein L27

Details for DVU0928 - 50S ribosomal protein L27

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0928

Tuberculist Genomic Region

DVU2222 Single-stranded DNA-binding protein

Details for DVU2222 - Single-stranded DNA-binding protein

GO Terms: GO:0006260, GO:0003697

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2222

Tuberculist Genomic Region

DVU1033 Competence/damage-inducible protein CinA protein, truncation

Details for DVU1033 - Competence/damage-inducible protein CinA protein, truncation

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1033

Tuberculist Genomic Region

DVU2538 Threonine--tRNA ligase

Details for DVU2538 - Threonine--tRNA ligase

GO Terms: GO:0005524, GO:0005737, GO:0046872, GO:0004829, GO:0006435

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2538

Tuberculist Genomic Region

DVU1074 50S ribosomal protein L34

Details for DVU1074 - 50S ribosomal protein L34

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1074

Tuberculist Genomic Region

DVU2920 Elongation factor Tu

Details for DVU2920 - Elongation factor Tu

GO Terms: GO:0005525, GO:0003924, GO:0005737, GO:0003746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2920

Tuberculist Genomic Region

Displaying 1 - 20 of 20

Motifs

Motif 1: e-value: 1.5 e-value: 16000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1156

Sigma-54 dependent transcriptional regulator, putative/response regulator
 down-regulates -0.19

DVU1156

DVU1402

Transcriptional regulator, LysR family
 down-regulates -0.13

DVU1402

DVU2195

Uncharacterized protein
 down-regulates -0.26

DVU2195

DVU2532

Transcriptional regulator, MerR family
 up-regulates 0.11

DVU2532

DVU2547

Transcriptional regulator, putative
 down-regulates -0.23

DVU2547

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0090304 nucleic acid metabolic process 32 0.35 3 0.0022
BP GO:0044260 cellular macromolecule metabolic process 55 0.60 3 0.0113
BP GO:0006259 DNA metabolic process 17 0.18 2 0.0114
BP GO:0043170 macromolecule metabolic process 56 0.61 3 0.0119
BP GO:0006139 nucleobase-containing compound metabolic... 73 0.79 3 0.0257
BP GO:0015074 DNA integration 3 0.03 1 0.0323
BP GO:0034641 cellular nitrogen compound metabolic pro... 92 1.00 3 0.0494
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005622 intracellular 104 1.59 6 0.0003
CC GO:0044424 intracellular part 104 1.59 6 0.0003
CC GO:0005623 cell 145 2.21 6 0.0024
CC GO:0044464 cell part 145 2.21 6 0.0024
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0008320 protein transmembrane transporter activi... 4 0.03 1 0.0280
MF GO:0015450 P-P-bond-hydrolysis-driven protein trans... 4 0.03 1 0.0280
MF GO:0022884 macromolecule transmembrane transporter ... 4 0.03 1 0.0280
MF GO:0008565 protein transporter activity 5 0.04 1 0.0350
MF GO:0015399 primary active transmembrane transporter... 5 0.04 1 0.0350
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane... 5 0.04 1 0.0350

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