Desulfovibrio vulgaris Hildenborough Module 32 Residual: 0.43

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Summary

Residual: 0.43 Score: -55.5076 version: dvh_cmonkey_11_Mar_02

Members

DVU0401 Uncharacterized protein

Details for DVU0401 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0401

Tuberculist Genomic Region

DVU2149 Uncharacterized protein

Details for DVU2149 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2149

Tuberculist Genomic Region

DVU0613 Uncharacterized protein

Details for DVU0613 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0613

Tuberculist Genomic Region

DVU2157 Tail tape meausure protein, putative

Details for DVU2157 - Tail tape meausure protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2157

Tuberculist Genomic Region

DVU0888 Response regulator

Details for DVU0888 - Response regulator

GO Terms: GO:0000155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0888

Tuberculist Genomic Region

DVU2868 Uncharacterized protein

Details for DVU2868 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2868

Tuberculist Genomic Region

DVU0890 Homoserine dehydrogenase

Details for DVU0890 - Homoserine dehydrogenase

GO Terms: GO:0050661, GO:0016597, GO:0004412, GO:0009097, GO:0009086, GO:0009088

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0890

Tuberculist Genomic Region

DVUA0151 DNA-binding protein, putative

Details for DVUA0151 - DNA-binding protein, putative

GO Terms: GO:0043565

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0151

Tuberculist Genomic Region

DVU0894 Chorismate synthase

Details for DVU0894 - Chorismate synthase

GO Terms: GO:0009073, GO:0009423, GO:0004107

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0894

Tuberculist Genomic Region

DVU0426 Chromate transport family protein

Details for DVU0426 - Chromate transport family protein

GO Terms: GO:0015109

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0426

Tuberculist Genomic Region

DVU0901 Orotidine 5'-phosphate decarboxylase

Details for DVU0901 - Orotidine 5'-phosphate decarboxylase

GO Terms: GO:0044205, GO:0006207, GO:0004590

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0901

Tuberculist Genomic Region

DVU0892 Shikimate kinase

Details for DVU0892 - Shikimate kinase

GO Terms: GO:0005524, GO:0009073, GO:0009423, GO:0005737, GO:0000287, GO:0004765

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0892

Tuberculist Genomic Region

DVU0904 Single-stranded-DNA-specific exonuclease RecJ

Details for DVU0904 - Single-stranded-DNA-specific exonuclease RecJ

GO Terms: GO:0008409, GO:0006310, GO:0006281, GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0904

Tuberculist Genomic Region

DVU0906 Octanoyltransferase

Details for DVU0906 - Octanoyltransferase

GO Terms: GO:0006464, GO:0005737, GO:0009107, GO:0033819, GO:0016415

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0906

Tuberculist Genomic Region

DVU0970 Lipoprotein, putative

Details for DVU0970 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0970

Tuberculist Genomic Region

DVU2539 Uncharacterized protein

Details for DVU2539 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2539

Tuberculist Genomic Region

DVU1063 Transcriptional regulatory protein

Details for DVU1063 - Transcriptional regulatory protein

GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1063

Tuberculist Genomic Region

Displaying 1 - 17 of 17

Motifs

Motif 1: e-value: 5.7 e-value: 59

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0653

Sigma-54 dependent transcriptional regulator, putative/response regulator
 down-regulates -0.15

DVU0653

DVU0679

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.11

DVU0679

DVU0749

DNA-binding response regulator
 up-regulates 0.13

DVU0749

DVU0804

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.18

DVU0804

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.13

DVU2114

DVU2567

Uncharacterized protein
 up-regulates 0.12

DVU2567

DVU2832

Transcriptional regulator cII, putative
 up-regulates 0.17

DVU2832

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0009072 aromatic amino acid family metabolic pro... 3 0.02 1 0.0240
BP GO:0009073 aromatic amino acid family biosynthetic ... 3 0.02 1 0.0240
BP GO:0006222 UMP biosynthetic process 6 0.05 1 0.0480
BP GO:0009173 pyrimidine ribonucleoside monophosphate ... 6 0.05 1 0.0480
BP GO:0009174 pyrimidine ribonucleoside monophosphate ... 6 0.05 1 0.0480
BP GO:0044205 'de novo' UMP biosynthetic process 6 0.05 1 0.0480
BP GO:0046049 UMP metabolic process 6 0.05 1 0.0480
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0015103 inorganic anion transmembrane transporte... 5 0.03 1 0.0271
MF GO:0050661 NADP binding 5 0.03 1 0.0271
MF GO:0004527 exonuclease activity 6 0.03 1 0.0324
MF GO:0008509 anion transmembrane transporter activity 9 0.05 1 0.0483

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