Desulfovibrio vulgaris Hildenborough Module 48 Residual: 0.44 | Syntrophy Portal

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Summary

Residual: 0.44 Score: -38.8938 version: dvh_cmonkey_11_Mar_02

Members

DVU0079 ZIP zinc transporter family protein Details for DVU0079 - ZIP zinc transporter family protein GO Terms: GO:0016020, GO:0046873 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0079 Tuberculist Genomic Region	DVU1814 Cytochrome c oxidase, subunit III, putative Details for DVU1814 - Cytochrome c oxidase, subunit III, putative GO Terms: GO:0019646, GO:0004129, GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1814 Tuberculist Genomic Region
DVU0128 Membrane protein, putative Details for DVU0128 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0128 Tuberculist Genomic Region	DVU2243 1,4-alpha-glucan branching enzyme GlgB Details for DVU2243 - 1,4-alpha-glucan branching enzyme GlgB GO Terms: GO:0003844, GO:0043169, GO:0005978, GO:0004553 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2243 Tuberculist Genomic Region
DVU0327 Exopolysaccharide biosynthesis protein, putative Details for DVU0327 - Exopolysaccharide biosynthesis protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0327 Tuberculist Genomic Region	DVU2409 Bacterial extracellular solute-binding proteins, family 3 Details for DVU2409 - Bacterial extracellular solute-binding proteins, family 3 GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2409 Tuberculist Genomic Region
DVU0413 Potassium uptake protein, TrkH family Details for DVU0413 - Potassium uptake protein, TrkH family GO Terms: GO:0008324 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0413 Tuberculist Genomic Region	DVU2484 Cytochrome c family protein Details for DVU2484 - Cytochrome c family protein GO Terms: GO:0009055, GO:0020037 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2484 Tuberculist Genomic Region
DVU0612 STAS domain protein Details for DVU0612 - STAS domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0612 Tuberculist Genomic Region	DVU2485 Membrane protein, putative Details for DVU2485 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2485 Tuberculist Genomic Region
DVU1019 Conserved domain protein Details for DVU1019 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1019 Tuberculist Genomic Region	DVU2762 Membrane protein, putative Details for DVU2762 - Membrane protein, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2762 Tuberculist Genomic Region
DVU1242 VacJ lipoprotein, putative Details for DVU1242 - VacJ lipoprotein, putative GO Terms: GO:0016020 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1242 Tuberculist Genomic Region	DVU2787 Conserved domain protein Details for DVU2787 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2787 Tuberculist Genomic Region
DVU1458 Chemotaxis protein CheZ, putative Details for DVU1458 - Chemotaxis protein CheZ, putative GO Terms: GO:0009288, GO:0003824, GO:0050920 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1458 Tuberculist Genomic Region	DVU3255 Transcriptional regulator, CopG family Details for DVU3255 - Transcriptional regulator, CopG family GO Terms: GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3255 Tuberculist Genomic Region
DVU1590 DNA repair protein radA Details for DVU1590 - DNA repair protein radA GO Terms: GO:0005524, GO:0006281, GO:0008094, GO:0003684, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1590 Tuberculist Genomic Region	DVU3261 Fumarate reductase, cytochrome b subunit Details for DVU3261 - Fumarate reductase, cytochrome b subunit GO Terms: GO:0046872, GO:0016627, GO:0006099 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3261 Tuberculist Genomic Region
DVU1611 Molybdopterin oxidoreductase domain protein Details for DVU1611 - Molybdopterin oxidoreductase domain protein GO Terms: GO:0051536, GO:0046872, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1611 Tuberculist Genomic Region	DVU3375 Cell division ATP-binding protein FtsE, putative Details for DVU3375 - Cell division ATP-binding protein FtsE, putative GO Terms: GO:0005524, GO:0016887, GO:0051301 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3375 Tuberculist Genomic Region
DVU1813 Uncharacterized protein Details for DVU1813 - Uncharacterized protein GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1813 Tuberculist Genomic Region	DVU0441 Adenine deaminase Details for DVU0441 - Adenine deaminase GO Terms: GO:0006146, GO:0000034 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0441 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 170 Motif 2:

e-value: 170

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0110 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.14	DVU0110
DVU1063 Transcriptional regulatory protein	down-regulates	-0.15	DVU1063
DVU1754 Uncharacterized protein	down-regulates	-0.11	DVU1754
DVU2633 Transcriptional regulator, putative	up-regulates	0.19	DVU2633
DVU2788 Transcriptional regulator, ArsR family	up-regulates	0.17	DVU2788
DVU3080 Transcriptional regulator, putative	up-regulates	0.11	DVU3080

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0019439	aromatic compound catabolic process	4	0.03	1	0.0323
BP	GO:0044270	cellular nitrogen compound catabolic pro...	4	0.03	1	0.0323
BP	GO:0046700	heterocycle catabolic process	4	0.03	1	0.0323
BP	GO:1901361	organic cyclic compound catabolic proces...	4	0.03	1	0.0323
BP	GO:0045333	cellular respiration	5	0.04	1	0.0402
BP	GO:0015980	energy derivation by oxidation of organi...	6	0.05	1	0.0481
BP	GO:0022900	electron transport chain	6	0.05	1	0.0481

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016758	transferase activity, transferring hexos...	3	0.02	1	0.0163
MF	GO:0008324	cation transmembrane transporter activit...	7	0.04	1	0.0377

Essentiality

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