Desulfovibrio vulgaris Hildenborough Module 180 Residual: 0.43

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Summary

Residual: 0.43 Score: -47.288 version: dvh_cmonkey_11_Mar_02

Members

DVU0338 Hydrolase, haloacid dehalogenase-like family

Details for DVU0338 - Hydrolase, haloacid dehalogenase-like family

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0338

Tuberculist Genomic Region

DVU3167 Heme biosynthesis protein, putative

Details for DVU3167 - Heme biosynthesis protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3167

Tuberculist Genomic Region

DVU0350 Spore coat polysaccharide biosynthesis protein spsF

Details for DVU0350 - Spore coat polysaccharide biosynthesis protein spsF

GO Terms: GO:0009103

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0350

Tuberculist Genomic Region

DVU0142 Tryptophanyl-tRNA synthetase

Details for DVU0142 - Tryptophanyl-tRNA synthetase

GO Terms: GO:0005524, GO:0005737, GO:0004830, GO:0006436

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0142

Tuberculist Genomic Region

DVU0353 Alcohol dehydrogenase, iron-containing

Details for DVU0353 - Alcohol dehydrogenase, iron-containing

GO Terms: GO:0046872, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0353

Tuberculist Genomic Region

DVU0495 Uncharacterized protein

Details for DVU0495 - Uncharacterized protein

GO Terms: GO:0003723, GO:0005737, GO:0008168, GO:0006364

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0495

Tuberculist Genomic Region

DVU1424 Glycine dehydrogenase

Details for DVU1424 - Glycine dehydrogenase

GO Terms: GO:0006546, GO:0004375, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1424

Tuberculist Genomic Region

DVU0653 Sigma-54 dependent transcriptional regulator, putative/response regulator

Details for DVU0653 - Sigma-54 dependent transcriptional regulator, putative/response regulator

GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0653

Tuberculist Genomic Region

DVU2210 TPR domain protein

Details for DVU2210 - TPR domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2210

Tuberculist Genomic Region

DVU1039 Lipoprotein, putative

Details for DVU1039 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1039

Tuberculist Genomic Region

DVU2575 Peptidase, M20/M25/M40 family

Details for DVU2575 - Peptidase, M20/M25/M40 family

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2575

Tuberculist Genomic Region

DVU1040 Imidazoleglycerol-phosphate dehydratase

Details for DVU1040 - Imidazoleglycerol-phosphate dehydratase

GO Terms: GO:0005737, GO:0000105, GO:0004424

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1040

Tuberculist Genomic Region

DVU2757 Cyclic dehypoxanthine futalosine synthase

Details for DVU2757 - Cyclic dehypoxanthine futalosine synthase

GO Terms: GO:0051539, GO:0009234, GO:0016765

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2757

Tuberculist Genomic Region

DVU1185 Colicin V production family protein

Details for DVU1185 - Colicin V production family protein

GO Terms: GO:0016020, GO:0009403

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1185

Tuberculist Genomic Region

DVU2892 GTP cyclohydrolase FolE2

Details for DVU2892 - GTP cyclohydrolase FolE2

GO Terms: GO:0035998, GO:0003934

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2892

Tuberculist Genomic Region

DVU1927 Isoleucine--tRNA ligase

Details for DVU1927 - Isoleucine--tRNA ligase

GO Terms: GO:0005524, GO:0002161, GO:0005737, GO:0004822, GO:0006428, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1927

Tuberculist Genomic Region

DVU2942 Adenylosuccinate lyase

Details for DVU2942 - Adenylosuccinate lyase

GO Terms: GO:0044208, GO:0006189, GO:0070626, GO:0004018

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2942

Tuberculist Genomic Region

DVU3006 Polysaccharide biosynthesis protein/methyltransferase, putative

Details for DVU3006 - Polysaccharide biosynthesis protein/methyltransferase, putative

GO Terms: GO:0009103, GO:0008168

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3006

Tuberculist Genomic Region

DVU2951 Glutamine--tRNA ligase

Details for DVU2951 - Glutamine--tRNA ligase

GO Terms: GO:0005524, GO:0005737, GO:0004819, GO:0006425, GO:0006424

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2951

Tuberculist Genomic Region

DVU3198 DNA polymerase III, gamma and tau subunits, putative

Details for DVU3198 - DNA polymerase III, gamma and tau subunits, putative

GO Terms: GO:0005524, GO:0003677, GO:0009360, GO:0006260, GO:0003887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3198

Tuberculist Genomic Region

Displaying 1 - 20 of 20

Motifs

Motif 1: e-value: 810 e-value: 26000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0110

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.17

DVU0110

DVU0569

Sigma-54 dependent transcriptional regulator
 up-regulates 0.21

DVU0569

DVU1561

Molybdenum-binding protein, HTH domain
 down-regulates -0.18

DVU1561

DVU2802

Transcriptional regulator, GntR family
 down-regulates -0.26

DVU2802

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.23

DVU3142

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0008653 lipopolysaccharide metabolic process 3 0.04 2 0.0004
BP GO:0009103 lipopolysaccharide biosynthetic process 3 0.04 2 0.0004
BP GO:0000271 polysaccharide biosynthetic process 7 0.09 2 0.0030
BP GO:0005976 polysaccharide metabolic process 7 0.09 2 0.0030
BP GO:0033692 cellular polysaccharide biosynthetic pro... 7 0.09 2 0.0030
BP GO:0034637 cellular carbohydrate biosynthetic proce... 7 0.09 2 0.0030
BP GO:0044264 cellular polysaccharide metabolic proces... 7 0.09 2 0.0030
BP GO:0008610 lipid biosynthetic process 10 0.14 2 0.0063
BP GO:0044255 cellular lipid metabolic process 10 0.14 2 0.0063
BP GO:0006629 lipid metabolic process 11 0.15 2 0.0077
BP GO:0016051 carbohydrate biosynthetic process 11 0.15 2 0.0077
BP GO:0044262 cellular carbohydrate metabolic process 11 0.15 2 0.0077
BP GO:1901137 carbohydrate derivative biosynthetic pro... 40 0.54 3 0.0102
BP GO:0044237 cellular metabolic process 163 2.21 5 0.0163
BP GO:0044723 single-organism carbohydrate metabolic p... 16 0.22 2 0.0164
BP GO:1901135 carbohydrate derivative metabolic proces... 49 0.66 3 0.0182
BP GO:0044249 cellular biosynthetic process 98 1.33 4 0.0189
BP GO:1901576 organic substance biosynthetic process 102 1.38 4 0.0220
BP GO:0009059 macromolecule biosynthetic process 19 0.26 2 0.0229
BP GO:0034645 cellular macromolecule biosynthetic proc... 19 0.26 2 0.0229
BP GO:0071704 organic substance metabolic process 177 2.40 5 0.0247
BP GO:0006167 AMP biosynthetic process 3 0.04 1 0.0402
BP GO:0009069 serine family amino acid metabolic proce... 3 0.04 1 0.0402
BP GO:0046033 AMP metabolic process 3 0.04 1 0.0402
BP GO:0044710 single-organism metabolic process 124 1.68 4 0.0455

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