Desulfovibrio vulgaris Hildenborough Module 259 Residual: 0.39 | Syntrophy Portal

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Summary

Residual: 0.39 Score: -69.4252 version: dvh_cmonkey_11_Mar_02

Members

DVU2127 von Willebrand factor type A domain protein Details for DVU2127 - von Willebrand factor type A domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2127 Tuberculist Genomic Region	DVU2151 Uncharacterized protein Details for DVU2151 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2151 Tuberculist Genomic Region
DVU0888 Response regulator Details for DVU0888 - Response regulator GO Terms: GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0888 Tuberculist Genomic Region	DVU2157 Tail tape meausure protein, putative Details for DVU2157 - Tail tape meausure protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2157 Tuberculist Genomic Region
DVU1107 Tail tape measure protein Details for DVU1107 - Tail tape measure protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1107 Tuberculist Genomic Region	DVU2191 Uncharacterized protein Details for DVU2191 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2191 Tuberculist Genomic Region
DVU2120 Uncharacterized protein Details for DVU2120 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2120 Tuberculist Genomic Region	DVU2194 Uncharacterized protein Details for DVU2194 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2194 Tuberculist Genomic Region
DVU2129 Sensory box histidine kinase/response regulator Details for DVU2129 - Sensory box histidine kinase/response regulator GO Terms: GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2129 Tuberculist Genomic Region	DVU3306 Uncharacterized protein Details for DVU3306 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3306 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 5700 Motif 2:

e-value: 2000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0679 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.22	DVU0679
DVU1063 Transcriptional regulatory protein	up-regulates	0.10	DVU1063
DVU1083 Phosphate regulon transcriptional regulator PhoB	up-regulates	0.14	DVU1083
DVU1402 Transcriptional regulator, LysR family	up-regulates	0.17	DVU1402
DVU1561 Molybdenum-binding protein, HTH domain	up-regulates	0.11	DVU1561
DVU2886 Transcriptional regulator, AraC family	down-regulates	-0.15	DVU2886
DVU3066 DNA-binding protein	up-regulates	0.10	DVU3066
DVU3142 Sigma-54 dependent transcriptional regulator	up-regulates	0.32	DVU3142
DVU3229 RNA polymerase sigma factor	down-regulates	-0.14	DVU3229
[field_regulator_taxonomy_regulat_1]	up-regulates	15.68	Oxygen

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0000155	phosphorelay sensor kinase activity	12	0.01	1	0.0094
MF	GO:0004672	protein kinase activity	12	0.01	1	0.0094
MF	GO:0004673	protein histidine kinase activity	12	0.01	1	0.0094
MF	GO:0004872	receptor activity	12	0.01	1	0.0094
MF	GO:0016775	phosphotransferase activity, nitrogenous...	12	0.01	1	0.0094
MF	GO:0038023	signaling receptor activity	12	0.01	1	0.0094
MF	GO:0016773	phosphotransferase activity, alcohol gro...	16	0.01	1	0.0125
MF	GO:0004871	signal transducer activity	18	0.01	1	0.0141
MF	GO:0060089	molecular transducer activity	19	0.01	1	0.0148
MF	GO:0016301	kinase activity	22	0.02	1	0.0172
MF	GO:0016772	transferase activity, transferring phosp...	36	0.03	1	0.0281

Essentiality

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