Desulfovibrio vulgaris Hildenborough Module 268 Residual: 0.47 | Syntrophy Portal

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Summary

Residual: 0.47 Score: -40.7745 version: dvh_cmonkey_11_Mar_02

Members

DVU0722 Response regulator Details for DVU0722 - Response regulator GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0722 Tuberculist Genomic Region	DVU1548 Outer membrane transport protein, OmpP1/FadL/TodX family Details for DVU1548 - Outer membrane transport protein, OmpP1/FadL/TodX family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1548 Tuberculist Genomic Region
DVU1428 Phosphoglucomutase, alpha-D-glucose phosphate-specific Details for DVU1428 - Phosphoglucomutase, alpha-D-glucose phosphate-specific GO Terms: GO:0005975, GO:0000287, GO:0004614 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1428 Tuberculist Genomic Region	DVU1590 DNA repair protein radA Details for DVU1590 - DNA repair protein radA GO Terms: GO:0005524, GO:0006281, GO:0008094, GO:0003684, GO:0046872 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1590 Tuberculist Genomic Region
DVU2417 SlyX protein Details for DVU2417 - SlyX protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2417 Tuberculist Genomic Region	DVU2140 Thymidylate kinase Details for DVU2140 - Thymidylate kinase GO Terms: GO:0005524, GO:0006233, GO:0006235, GO:0004798 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2140 Tuberculist Genomic Region
DVU2515 HD domain protein Details for DVU2515 - HD domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2515 Tuberculist Genomic Region	DVU2243 1,4-alpha-glucan branching enzyme GlgB Details for DVU2243 - 1,4-alpha-glucan branching enzyme GlgB GO Terms: GO:0003844, GO:0043169, GO:0005978, GO:0004553 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2243 Tuberculist Genomic Region
DVU3356 NAD-dependent epimerase/dehydratase family protein Details for DVU3356 - NAD-dependent epimerase/dehydratase family protein GO Terms: GO:0005975, GO:0050662, GO:0016857 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3356 Tuberculist Genomic Region	DVU2416 Uncharacterized protein Details for DVU2416 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2416 Tuberculist Genomic Region
DVU0128 Membrane protein, putative Details for DVU0128 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0128 Tuberculist Genomic Region	DVU2484 Cytochrome c family protein Details for DVU2484 - Cytochrome c family protein GO Terms: GO:0009055, GO:0020037 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2484 Tuberculist Genomic Region
DVU0299 Anaerobic ribonucleoside-triphosphate reductase, putative Details for DVU0299 - Anaerobic ribonucleoside-triphosphate reductase, putative GO Terms: GO:0005524, GO:0006260, GO:0008998 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0299 Tuberculist Genomic Region	DVU2485 Membrane protein, putative Details for DVU2485 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2485 Tuberculist Genomic Region
DVU0300 Radical SAM domain protein Details for DVU0300 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0300 Tuberculist Genomic Region	DVU2673 Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation Details for DVU2673 - Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation GO Terms: GO:0004368, GO:0009331, GO:0006072 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2673 Tuberculist Genomic Region
DVU0613 Uncharacterized protein Details for DVU0613 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0613 Tuberculist Genomic Region	DVU2762 Membrane protein, putative Details for DVU2762 - Membrane protein, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2762 Tuberculist Genomic Region
DVU1361 Lipid A disaccharide synthase Details for DVU1361 - Lipid A disaccharide synthase GO Terms: GO:0009245, GO:0008915 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1361 Tuberculist Genomic Region	DVU3355 SPFH domain/Band 7 family protein Details for DVU3355 - SPFH domain/Band 7 family protein GO Terms: GO:0016020 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3355 Tuberculist Genomic Region
DVU1458 Chemotaxis protein CheZ, putative Details for DVU1458 - Chemotaxis protein CheZ, putative GO Terms: GO:0009288, GO:0003824, GO:0050920 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1458 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 840 Motif 2:

e-value: 17000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0110 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.37	DVU0110
DVU1754 Uncharacterized protein	down-regulates	-0.17	DVU1754
DVU2633 Transcriptional regulator, putative	up-regulates	0.19	DVU2633

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0005975	carbohydrate metabolic process	33	0.36	3	0.0025

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0016758	transferase activity, transferring hexos...	3	0.02	1	0.0163

Essentiality

Comments

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