Desulfovibrio vulgaris Hildenborough Module 336 Residual: 0.39

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Summary

Residual: 0.39 Score: -60.8013 version: dvh_cmonkey_11_Mar_02

Members

DVU0968 Amino acid ABC transporter, ATP-binding protein

Details for DVU0968 - Amino acid ABC transporter, ATP-binding protein

GO Terms: GO:0005524, GO:0016887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0968

Tuberculist Genomic Region

DVU1776 Uncharacterized protein

Details for DVU1776 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1776

Tuberculist Genomic Region

DVU0506 DHH family protein

Details for DVU0506 - DHH family protein

GO Terms: GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0506

Tuberculist Genomic Region

DVU1935 Phosphonate ABC transporter, permease protein

Details for DVU1935 - Phosphonate ABC transporter, permease protein

GO Terms: GO:0005887, GO:0015604

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1935

Tuberculist Genomic Region

DVU0787 Uncharacterized protein

Details for DVU0787 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0787

Tuberculist Genomic Region

DVU2036 Helix-turn-helix protein, CopG family

Details for DVU2036 - Helix-turn-helix protein, CopG family

GO Terms: GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2036

Tuberculist Genomic Region

DVU0788 Cell shape-determining protein MreC

Details for DVU0788 - Cell shape-determining protein MreC

GO Terms: GO:0008360

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0788

Tuberculist Genomic Region

DVU2374 Lipoprotein-releasing system ATP-binding protein LolD

Details for DVU2374 - Lipoprotein-releasing system ATP-binding protein LolD

GO Terms: GO:0005524, GO:0043190, GO:0016887, GO:0042954

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2374

Tuberculist Genomic Region

DVU0967 Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

Details for DVU0967 - Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family

GO Terms: GO:0016021, GO:0005886, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0967

Tuberculist Genomic Region

DVU2375 Lipoprotein releasing system, permease protein

Details for DVU2375 - Lipoprotein releasing system, permease protein

GO Terms: GO:0016021, GO:0042954, GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2375

Tuberculist Genomic Region

DVU1532 Phosphopantetheine adenylyltransferase

Details for DVU1532 - Phosphopantetheine adenylyltransferase

GO Terms: GO:0005524, GO:0015937, GO:0005737, GO:0004595

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1532

Tuberculist Genomic Region

DVU3069 Uncharacterized protein

Details for DVU3069 - Uncharacterized protein

GO Terms: GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3069

Tuberculist Genomic Region

DVU1671 ABC transporter, ATP-binding protein/permease protein

Details for DVU1671 - ABC transporter, ATP-binding protein/permease protein

GO Terms: GO:0005524, GO:0042626, GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1671

Tuberculist Genomic Region

DVU3164 ABC transporter, permease protein

Details for DVU3164 - ABC transporter, permease protein

GO Terms: GO:0055052, GO:0015794, GO:0001407, GO:0005887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3164

Tuberculist Genomic Region

DVU1673 Acyltransferase, putative

Details for DVU1673 - Acyltransferase, putative

GO Terms: GO:0016021, GO:0009244, GO:0016746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1673

Tuberculist Genomic Region

DVU3165 Conserved domain protein

Details for DVU3165 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3165

Tuberculist Genomic Region

Displaying 1 - 16 of 16

Motifs

Motif 1: e-value: 950 e-value: 660

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1419

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.11

DVU1419

DVU1561

Molybdenum-binding protein, HTH domain
 down-regulates -0.13

DVU1561

DVU2195

Uncharacterized protein
 down-regulates -0.14

DVU2195

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.15

DVU3142

DVU3255

Transcriptional regulator, CopG family
 up-regulates 0.34

DVU3255

DVUA0151

DNA-binding protein, putative
 down-regulates -0.13

DVUA0151

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0000902 cell morphogenesis 3 0.02 1 0.0162
BP GO:0009653 anatomical structure morphogenesis 3 0.02 1 0.0162
BP GO:0032502 developmental process 3 0.02 1 0.0162
BP GO:0032989 cellular component morphogenesis 3 0.02 1 0.0162
BP GO:0044767 single-organism developmental process 3 0.02 1 0.0162
BP GO:0048856 anatomical structure development 3 0.02 1 0.0162
BP GO:0048869 cellular developmental process 3 0.02 1 0.0162
BP GO:0050789 regulation of biological process 51 0.28 2 0.0188
BP GO:0050794 regulation of cellular process 51 0.28 2 0.0188
BP GO:0065007 biological regulation 55 0.30 2 0.0219
BP GO:0006355 regulation of transcription, DNA-templat... 7 0.04 1 0.0376
BP GO:0009889 regulation of biosynthetic process 7 0.04 1 0.0376
BP GO:0010468 regulation of gene expression 7 0.04 1 0.0376
BP GO:0010556 regulation of macromolecule biosynthetic... 7 0.04 1 0.0376
BP GO:0019219 regulation of nucleobase-containing comp... 7 0.04 1 0.0376
BP GO:0019222 regulation of metabolic process 7 0.04 1 0.0376
BP GO:0031323 regulation of cellular metabolic process 7 0.04 1 0.0376
BP GO:0031326 regulation of cellular biosynthetic proc... 7 0.04 1 0.0376
BP GO:0051171 regulation of nitrogen compound metaboli... 7 0.04 1 0.0376
BP GO:0051252 regulation of RNA metabolic process 7 0.04 1 0.0376
BP GO:0060255 regulation of macromolecule metabolic pr... 7 0.04 1 0.0376
BP GO:0080090 regulation of primary metabolic process 7 0.04 1 0.0376
BP GO:2000112 regulation of cellular macromolecule bio... 7 0.04 1 0.0376
BP GO:2001141 regulation of RNA biosynthetic process 7 0.04 1 0.0376
BP GO:0006351 transcription, DNA-templated 9 0.05 1 0.0483
BP GO:0032774 RNA biosynthetic process 9 0.05 1 0.0483
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0044459 plasma membrane part 16 0.20 2 0.0140
CC GO:0016021 integral component of membrane 184 2.34 5 0.0220
CC GO:0031224 intrinsic component of membrane 184 2.34 5 0.0220
CC GO:0044425 membrane part 188 2.39 5 0.0240
CC GO:0005886 plasma membrane 21 0.27 2 0.0250
CC GO:0043190 ATP-binding cassette (ABC) transporter c... 3 0.04 1 0.0380
CC GO:0098533 ATPase dependent transmembrane transport... 3 0.04 1 0.0380
CC GO:1902495 transmembrane transporter complex 3 0.04 1 0.0380
CC GO:1990351 transporter complex 3 0.04 1 0.0380
CC GO:0071944 cell periphery 29 0.37 2 0.0460
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0097159 organic cyclic compound binding 611 2.86 6 0.0120
MF GO:1901363 heterocyclic compound binding 611 2.86 6 0.0120
MF GO:0005524 ATP binding 301 1.41 4 0.0300
MF GO:0032559 adenyl ribonucleotide binding 303 1.42 4 0.0310
MF GO:0030554 adenyl nucleotide binding 304 1.42 4 0.0310
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 1.52 4 0.0390
MF GO:0001882 nucleoside binding 327 1.53 4 0.0400
MF GO:0001883 purine nucleoside binding 327 1.53 4 0.0400
MF GO:0032549 ribonucleoside binding 327 1.53 4 0.0400
MF GO:0032550 purine ribonucleoside binding 327 1.53 4 0.0400
MF GO:0032555 purine ribonucleotide binding 332 1.56 4 0.0420
MF GO:0017076 purine nucleotide binding 333 1.56 4 0.0430
MF GO:0032553 ribonucleotide binding 345 1.62 4 0.0480
MF GO:0097367 carbohydrate derivative binding 345 1.62 4 0.0480

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