Desulfovibrio vulgaris Hildenborough Module 151 Residual: 0.44

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Summary

Residual: 0.44 Score: -66.9279 version: dvh_cmonkey_11_Mar_02

Members

DVU0873 Elongation factor Ts

Details for DVU0873 - Elongation factor Ts

GO Terms: GO:0005737, GO:0003746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0873

Tuberculist Genomic Region

DVU2927 50S ribosomal protein L7/L12

Details for DVU2927 - 50S ribosomal protein L7/L12

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2927

Tuberculist Genomic Region

DVU0874 30S ribosomal protein S2

Details for DVU0874 - 30S ribosomal protein S2

GO Terms: GO:0015935, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0874

Tuberculist Genomic Region

DVU2928 DNA-directed RNA polymerase subunit beta

Details for DVU2928 - DNA-directed RNA polymerase subunit beta

GO Terms: GO:0003677, GO:0003899, GO:0032549, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2928

Tuberculist Genomic Region

DVU0956 30S ribosomal protein S6

Details for DVU0956 - 30S ribosomal protein S6

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0956

Tuberculist Genomic Region

DVU2929 DNA-directed RNA polymerase subunit beta'

Details for DVU2929 - DNA-directed RNA polymerase subunit beta'

GO Terms: GO:0003677, GO:0003899, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2929

Tuberculist Genomic Region

DVU1287 Reductase, iron-sulfur binding subunit, putative

Details for DVU1287 - Reductase, iron-sulfur binding subunit, putative

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1287

Tuberculist Genomic Region

DVU1574 50S ribosomal protein L25

Details for DVU1574 - 50S ribosomal protein L25

GO Terms: GO:0008097, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1574

Tuberculist Genomic Region

DVU1288 Cytochrome c family protein

Details for DVU1288 - Cytochrome c family protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1288

Tuberculist Genomic Region

DVU2231 GTP-binding protein TypA

Details for DVU2231 - GTP-binding protein TypA

GO Terms: GO:0005525, GO:0003924

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2231

Tuberculist Genomic Region

DVU1289 Reductase, iron-sulfur binding subunit, putative

Details for DVU1289 - Reductase, iron-sulfur binding subunit, putative

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1289

Tuberculist Genomic Region

DVU2518 50S ribosomal protein L13

Details for DVU2518 - 50S ribosomal protein L13

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2518

Tuberculist Genomic Region

DVU1293 Uncharacterized protein

Details for DVU1293 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1293

Tuberculist Genomic Region

DVU2923 Transcription termination/antitermination protein NusG

Details for DVU2923 - Transcription termination/antitermination protein NusG

GO Terms: GO:0006354, GO:0006353, GO:0032784, GO:0031564

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2923

Tuberculist Genomic Region

DVU2519 30S ribosomal protein S9

Details for DVU2519 - 30S ribosomal protein S9

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2519

Tuberculist Genomic Region

DVU2924 50S ribosomal protein L11

Details for DVU2924 - 50S ribosomal protein L11

GO Terms: GO:0070180, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2924

Tuberculist Genomic Region

DVU2922 Protein translocase subunit SecE

Details for DVU2922 - Protein translocase subunit SecE

GO Terms: GO:0015450, GO:0016021, GO:0005622, GO:0065002, GO:0005886, GO:0009306, GO:0006605, GO:0043952

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2922

Tuberculist Genomic Region

DVU2926 50S ribosomal protein L10

Details for DVU2926 - 50S ribosomal protein L10

GO Terms: GO:0070180, GO:0005840, GO:0042254, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2926

Tuberculist Genomic Region

DVU2925 50S ribosomal protein L1

Details for DVU2925 - 50S ribosomal protein L1

GO Terms: GO:0015934, GO:0019843, GO:0006417, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2925

Tuberculist Genomic Region

Displaying 1 - 19 of 19

Motifs

Motif 1: e-value: 180 e-value: 3200

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1561

Molybdenum-binding protein, HTH domain
 down-regulates -0.34

DVU1561

DVU2547

Transcriptional regulator, putative
 down-regulates -0.53

DVU2547

DVU2588

DNA-binding response regulator
 down-regulates -0.21

DVU2588

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006351 transcription, DNA-templated 9 0.02 1 0.0244
BP GO:0032774 RNA biosynthetic process 9 0.02 1 0.0244
BP GO:0010467 gene expression 14 0.04 1 0.0379
BP GO:0016070 RNA metabolic process 15 0.04 1 0.0407
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0043226 organelle 48 0.73 5 0.0001
CC GO:0043228 non-membrane-bounded organelle 48 0.73 5 0.0001
CC GO:0005622 intracellular 104 1.59 6 0.0003
CC GO:0044424 intracellular part 104 1.59 6 0.0003
CC GO:0005623 cell 145 2.21 6 0.0024
CC GO:0044464 cell part 145 2.21 6 0.0024
CC GO:0044391 ribosomal subunit 8 0.12 2 0.0052
CC GO:0044446 intracellular organelle part 8 0.12 2 0.0052
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003723 RNA binding 54 0.42 4 0.0005
MF GO:0003676 nucleic acid binding 222 1.73 6 0.0029
MF GO:0008320 protein transmembrane transporter activi... 4 0.03 1 0.0309
MF GO:0015450 P-P-bond-hydrolysis-driven protein trans... 4 0.03 1 0.0309
MF GO:0022884 macromolecule transmembrane transporter ... 4 0.03 1 0.0309
MF GO:0008565 protein transporter activity 5 0.04 1 0.0385
MF GO:0015399 primary active transmembrane transporter... 5 0.04 1 0.0385
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane... 5 0.04 1 0.0385

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