Desulfovibrio vulgaris Hildenborough Module 187 Residual: 0.42 | Syntrophy Portal

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Summary

Residual: 0.42 Score: -50.8209 version: dvh_cmonkey_11_Mar_02

Members

DVU1351 Membrane protein, MarC family Details for DVU1351 - Membrane protein, MarC family GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1351 Tuberculist Genomic Region	DVU1020 HD domain/sensory box protein Details for DVU1020 - HD domain/sensory box protein GO Terms: GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1020 Tuberculist Genomic Region
DVU1361 Lipid A disaccharide synthase Details for DVU1361 - Lipid A disaccharide synthase GO Terms: GO:0009245, GO:0008915 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1361 Tuberculist Genomic Region	DVU1533 tRNA dimethylallyltransferase Details for DVU1533 - tRNA dimethylallyltransferase GO Terms: GO:0005524, GO:0052381, GO:0008033 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1533 Tuberculist Genomic Region
DVU1480 Conserved domain protein Details for DVU1480 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1480 Tuberculist Genomic Region	DVU1688 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative Details for DVU1688 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative GO Terms: GO:0016746 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1688 Tuberculist Genomic Region
DVU1859 Uncharacterized protein Details for DVU1859 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1859 Tuberculist Genomic Region	DVU2409 Bacterial extracellular solute-binding proteins, family 3 Details for DVU2409 - Bacterial extracellular solute-binding proteins, family 3 GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2409 Tuberculist Genomic Region
DVU1966 Uncharacterized protein Details for DVU1966 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1966 Tuberculist Genomic Region	DVU2569 Peptidyl-prolyl cis-trans isomerase Details for DVU2569 - Peptidyl-prolyl cis-trans isomerase GO Terms: GO:0003755, GO:0006457 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2569 Tuberculist Genomic Region
DVU2114 Sigma-54 dependent transcriptional regulator/response regulator Details for DVU2114 - Sigma-54 dependent transcriptional regulator/response regulator GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2114 Tuberculist Genomic Region	DVU3080 Transcriptional regulator, putative Details for DVU3080 - Transcriptional regulator, putative GO Terms: GO:0003677, GO:0006355, GO:0008270 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3080 Tuberculist Genomic Region
DVU2128 Uncharacterized protein Details for DVU2128 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2128 Tuberculist Genomic Region	DVUA0017 Uncharacterized protein Details for DVUA0017 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0017 Tuberculist Genomic Region
DVU2392 Type III secretion chaperone, CesT family Details for DVU2392 - Type III secretion chaperone, CesT family GO Terms: GO:0005737, GO:0009405, GO:0050708 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2392 Tuberculist Genomic Region	DVUA0067 Membrane protein, putative Details for DVUA0067 - Membrane protein, putative GO Terms: GO:0016020, GO:0016747 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0067 Tuberculist Genomic Region
DVU0669 Uncharacterized protein Details for DVU0669 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0669 Tuberculist Genomic Region	DVUA0068 Membrane protein, putative Details for DVUA0068 - Membrane protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0068 Tuberculist Genomic Region
DVU1019 Conserved domain protein Details for DVU1019 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1019 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 110 Motif 2:

e-value: 1100

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1964 Transcriptional regulator, rrf2 protein, putative	up-regulates	0.14	DVU1964
DVU2036 Helix-turn-helix protein, CopG family	up-regulates	0.11	DVU2036
DVU2633 Transcriptional regulator, putative	up-regulates	0.11	DVU2633
DVUA0143 Nif-specific regulatory protein	down-regulates	-0.43	DVUA0143
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.26	Formate
[field_regulator_taxonomy_regulat_1]	down-regulates	-0.37	Peroxide

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006644	phospholipid metabolic process	5	0.01	1	0.0136
BP	GO:0008654	phospholipid biosynthetic process	5	0.01	1	0.0136
BP	GO:0008610	lipid biosynthetic process	10	0.03	1	0.0271
BP	GO:0044255	cellular lipid metabolic process	10	0.03	1	0.0271
BP	GO:0006629	lipid metabolic process	11	0.03	1	0.0298
BP	GO:0016051	carbohydrate biosynthetic process	11	0.03	1	0.0298
BP	GO:0044723	single-organism carbohydrate metabolic p...	16	0.04	1	0.0434

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase acti...	6	0.03	1	0.0280
MF	GO:0016859	cis-trans isomerase activity	6	0.03	1	0.0280

Essentiality

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