Desulfovibrio vulgaris Hildenborough Module 227 Residual: 0.46 | Syntrophy Portal

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Summary

Residual: 0.46 Score: -39.4426 version: dvh_cmonkey_11_Mar_02

Members

DVU0525 Transcriptional regulator, MarR family Details for DVU0525 - Transcriptional regulator, MarR family GO Terms: GO:0003677, GO:0005622, GO:0003700, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0525 Tuberculist Genomic Region	DVU1467 ATP-dependent protease ATPase subunit HslU Details for DVU1467 - ATP-dependent protease ATPase subunit HslU GO Terms: GO:0005524, GO:0016887, GO:0009376, GO:0070011, GO:0043335 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1467 Tuberculist Genomic Region
DVU3366 Peptide deformylase Details for DVU3366 - Peptide deformylase GO Terms: GO:0005506, GO:0042586, GO:0006412 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3366 Tuberculist Genomic Region	DVU1788 RNA polymerase sigma factor RpoD Details for DVU1788 - RNA polymerase sigma factor RpoD GO Terms: GO:0003677, GO:0005737, GO:0003700, GO:0016987, GO:0001123 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1788 Tuberculist Genomic Region
DVU0759 Peptidase, M29 family Details for DVU0759 - Peptidase, M29 family GO Terms: GO:0004177 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0759 Tuberculist Genomic Region	DVU1789 DNA primase Details for DVU1789 - DNA primase GO Terms: GO:0003677, GO:0003896, GO:1990077, GO:0008270 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1789 Tuberculist Genomic Region
DVU0825 Protein translocase subunit SecA Details for DVU0825 - Protein translocase subunit SecA GO Terms: GO:0005524, GO:0005737, GO:0065002, GO:0046872, GO:0005886, GO:0017038, GO:0006605 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0825 Tuberculist Genomic Region	DVU1855 Integrase, truncation Details for DVU1855 - Integrase, truncation GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1855 Tuberculist Genomic Region
DVU0856 Porphobilinogen synthase Details for DVU0856 - Porphobilinogen synthase GO Terms: GO:0046872, GO:0004655, GO:0033014 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0856 Tuberculist Genomic Region	DVU2363 Hydroxyethylthiazole kinase Details for DVU2363 - Hydroxyethylthiazole kinase GO Terms: GO:0005524, GO:0004417, GO:0000287, GO:0009228, GO:0009229 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2363 Tuberculist Genomic Region
DVU0864 Glycoprotease family protein, putative Details for DVU0864 - Glycoprotease family protein, putative GO Terms: GO:0008233, GO:0070526 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0864 Tuberculist Genomic Region	DVU2487 Uncharacterized protein Details for DVU2487 - Uncharacterized protein GO Terms: GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2487 Tuberculist Genomic Region
DVU0865 Zinc metalloprotease Details for DVU0865 - Zinc metalloprotease GO Terms: GO:0016021, GO:0046872, GO:0004222, GO:0005886 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0865 Tuberculist Genomic Region	DVU2488 Uncharacterized protein Details for DVU2488 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2488 Tuberculist Genomic Region
DVU1191 Lon protease Details for DVU1191 - Lon protease GO Terms: GO:0005524, GO:0004176, GO:0033554, GO:0005737, GO:0006515, GO:0043565, GO:0004252 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1191 Tuberculist Genomic Region	DVU2554 Uncharacterized protein Details for DVU2554 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2554 Tuberculist Genomic Region
DVU1193 DNA repair protein RadC Details for DVU1193 - DNA repair protein RadC GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1193 Tuberculist Genomic Region	DVU3243 Chaperone protein DnaJ Details for DVU3243 - Chaperone protein DnaJ GO Terms: GO:0005524, GO:0006260, GO:0005737, GO:0006457, GO:0009408, GO:0008270 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3243 Tuberculist Genomic Region
DVU1267 Uncharacterized protein Details for DVU1267 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1267 Tuberculist Genomic Region	DVU3315 Dihydroorotate dehydrogenase, electron transfer subunit Details for DVU3315 - Dihydroorotate dehydrogenase, electron transfer subunit GO Terms: GO:0051537, GO:0050660, GO:0016491, GO:0006221 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3315 Tuberculist Genomic Region
DVU1432 Radical SAM domain protein Details for DVU1432 - Radical SAM domain protein GO Terms: GO:0003824, GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1432 Tuberculist Genomic Region	DVU3365 Methionyl-tRNA formyltransferase Details for DVU3365 - Methionyl-tRNA formyltransferase GO Terms: GO:0004479, GO:0008168 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3365 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 4100 Motif 2:

e-value: 8300

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0230 Transcriptional regulator cII, putative	up-regulates	0.11	DVU0230
DVU0277 Transcriptional regulator, AraC family	down-regulates	-0.30	DVU0277
DVU0813 Heat-inducible transcription repressor HrcA	up-regulates	0.33	DVU0813
DVU3111 Transcriptional regulator, Crp/Fnr family	up-regulates	0.26	DVU3111

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0008233	peptidase activity	20	0.23	2	0.0220
MF	GO:0004177	aminopeptidase activity	3	0.04	1	0.0350
MF	GO:0008238	exopeptidase activity	4	0.05	1	0.0460

Essentiality

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