Methanococcus maripaludis S2 Module 151 Residual: 0.49

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Summary

Residual: 0.49 Score: -8.88795 version: mmp_cmonkey_11_Oct_11

Members

MMP0009 putative DNA primase large subunit (NCBI)

Details for MMP0009 - putative DNA primase large subunit (NCBI)

GO Terms: GO:0006269, GO:0005658, GO:0003896

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0009

Tuberculist Genomic Region

MMP1679 conserved hypothetical archeal protein (NCBI)

Details for MMP1679 - conserved hypothetical archeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1679

Tuberculist Genomic Region

MMP0063 Acetylglutamate kinase (NCBI)

Details for MMP0063 - Acetylglutamate kinase (NCBI)

GO Terms: GO:0006561, GO:0006526, GO:0005737, GO:0004349, GO:0003991

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0063

Tuberculist Genomic Region

MMP0090 Glycosyl transferase (NCBI)

Details for MMP0090 - Glycosyl transferase (NCBI)

GO Terms: GO:0009058

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0090

Tuberculist Genomic Region

MMP0369 conserved hypothetical protein (NCBI)

Details for MMP0369 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0369

Tuberculist Genomic Region

MMP0585 Universal stress protein (Usp) (NCBI)

Details for MMP0585 - Universal stress protein (Usp) (NCBI)

GO Terms: GO:0006950

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0585

Tuberculist Genomic Region

MMP0598 archaeal phosphoglycerate mutase-related (NCBI)

Details for MMP0598 - archaeal phosphoglycerate mutase-related (NCBI)

GO Terms: GO:0046537, GO:0046538, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0598

Tuberculist Genomic Region

MMP1179 SAM (and some other nucleotide) binding motif:Generic methyltransferase (NCBI)

Details for MMP1179 - SAM (and some other nucleotide) binding motif:Generic methyltransferase (NCBI)

GO Terms: GO:0008610, GO:0008152, GO:0006479, GO:0005737, GO:0008825, GO:0008168, GO:0008276

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1179

Tuberculist Genomic Region

MMP0614 related to iron-sulfur flavoprotein of Methanosarcina thermophila (NCBI)

Details for MMP0614 - related to iron-sulfur flavoprotein of Methanosarcina thermophila (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0614

Tuberculist Genomic Region

MMP1526 Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain (NCBI)

Details for MMP1526 - Ribonuclease III family:Double-stranded RNA binding (DsRBD) domain (NCBI)

GO Terms: GO:0016075, GO:0006396, GO:0005622, GO:0004525, GO:0003725

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1526

Tuberculist Genomic Region

MMP0886 cobalt transport system permease related protein (NCBI)

Details for MMP0886 - cobalt transport system permease related protein (NCBI)

GO Terms: GO:0006824, GO:0009236, GO:0015087

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0886

Tuberculist Genomic Region

RNA_47 5S ribosomal RNA (RefSeq)

Details for RNA_47 - 5S ribosomal RNA (RefSeq)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: RNA_47

Tuberculist Genomic Region

MMP0939 Conserved hypothetical protein (NCBI)

Details for MMP0939 - Conserved hypothetical protein (NCBI)

GO Terms: GO:0008152, GO:0008967

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0939

Tuberculist Genomic Region

MMP0725 putative integral membrane protein (NCBI)

Details for MMP0725 - putative integral membrane protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0725

Tuberculist Genomic Region

MMP1056 conserved hypothetical protein (NCBI)

Details for MMP1056 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1056

Tuberculist Genomic Region

MMP0769 conserved hypothetical archaeal protein (NCBI)

Details for MMP0769 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0769

Tuberculist Genomic Region

MMP1262 conserved hypothetical protein (NCBI)

Details for MMP1262 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1262

Tuberculist Genomic Region

MMP0515 Molybdenum ABC transporter, permease protein (NCBI)

Details for MMP0515 - Molybdenum ABC transporter, permease protein (NCBI)

GO Terms: GO:0015689, GO:0016021, GO:0015098

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0515

Tuberculist Genomic Region

MMP1343 conserved hypothetical protein (NCBI)

Details for MMP1343 - conserved hypothetical protein (NCBI)

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1343

Tuberculist Genomic Region

RNA_23 tRNA-Glu (RefSeq)

Details for RNA_23 - tRNA-Glu (RefSeq)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: RNA_23

Tuberculist Genomic Region

MMP1388 Redox-active disulfide protein 2 (NCBI)

Details for MMP1388 - Redox-active disulfide protein 2 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1388

Tuberculist Genomic Region

MMP0475 hypothetical protein (NCBI)

Details for MMP0475 - hypothetical protein (NCBI)

GO Terms: GO:0042981, GO:0005515

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0475

Tuberculist Genomic Region

MMP1525 Modulator of DNA gyrase (NCBI)

Details for MMP1525 - Modulator of DNA gyrase (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1525

Tuberculist Genomic Region

Displaying 1 - 23 of 23

Motifs

Motif 1: e-value: 0.017 e-value: 970

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0499

conserved hypothetical protein (NCBI)

MMP1065

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.52

MMP0499

MMP1065

MMP0499

conserved hypothetical protein (NCBI)

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 up-regulates 0.25

MMP0499

MMP1015

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0043190 ATP-binding cassette (ABC) transporter c... 3 0.03 1 0.0330
CC GO:0044459 plasma membrane part 3 0.03 1 0.0330
CC GO:0098533 ATPase dependent transmembrane transport... 3 0.03 1 0.0330
CC GO:1902494 catalytic complex 3 0.03 1 0.0330
CC GO:1902495 transmembrane transporter complex 3 0.03 1 0.0330
CC GO:1990351 transporter complex 3 0.03 1 0.0330
CC GO:0005886 plasma membrane 4 0.04 1 0.0440
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0046872 metal ion binding 24 0.22 2 0.0180
MF GO:0043169 cation binding 26 0.24 2 0.0210

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