Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC0240(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC0240
|Gene||Common Name||Description||Module membership|
|BC0114||BC0114||RNA polymerase sigma-H factor (NCBI ptt file)||137, 405|
|BC0214||BC0214||hypothetical Membrane Spanning Protein (NCBI ptt file)||123, 498|
|BC0240||BC0240||hypothetical protein (NCBI ptt file)||123, 405|
|BC0319||BC0319||hypothetical protein (NCBI ptt file)||123, 415|
|BC0688||BC0688||Proline-specific permease (NCBI ptt file)||272, 405|
|BC0847||BC0847||Transporter, Drug/Metabolite Exporter family (NCBI ptt file)||340, 405|
|BC1157||BC1157||Alpha-amylase (NCBI ptt file)||405, 525|
|BC1239||BC1239||hypothetical Membrane Spanning Protein (NCBI ptt file)||405, 488|
|BC1263||BC1263||Phage integrase family protein (NCBI ptt file)||405, 517|
|BC1361||BC1361||CAAX amino terminal protease family (NCBI ptt file)||123, 363|
|BC1379||BC1379||Gentamicin resistance protein (NCBI ptt file)||364, 405|
|BC1508||BC1508||hypothetical protein (NCBI ptt file)||123, 155|
|BC1523||BC1523||Menaquinol-cytochrome c reductase cytochrome b subunit (NCBI ptt file)||150, 405|
|BC1576||BC1576||Thiosulfate sulfurtransferase (NCBI ptt file)||197, 405|
|BC1613||BC1613||Zn-dependent hydrolase (NCBI ptt file)||123, 498|
|BC1678||BC1678||JEMB (NCBI ptt file)||9, 123|
|BC1679||BC1679||Small acid soluble spore protein (NCBI ptt file)||24, 123|
|BC1749||BC1749||hypothetical protein (NCBI ptt file)||405, 495|
|BC1750||BC1750||hypothetical protein (NCBI ptt file)||405, 506|
|BC1751||BC1751||hypothetical protein (NCBI ptt file)||405, 495|
|BC1830||BC1830||Copper resistance protein A (NCBI ptt file)||123, 217|
|BC1836||BC1836||Branched-chain amino acid transport system carrier protein (NCBI ptt file)||405, 473|
|BC2047||BC2047||Branched-chain amino acid transport system carrier protein (NCBI ptt file)||213, 405|
|BC2291||BC2291||Transporter, LysE family (NCBI ptt file)||130, 405|
|BC2363||BC2363||Aspartate-semialdehyde dehydrogenase (NCBI ptt file)||123, 453|
|BC2417||BC2417||hypothetical protein (NCBI ptt file)||123, 217|
|BC2643||BC2643||hydrolase (HAD superfamily) (NCBI ptt file)||123, 241|
|BC2692||BC2692||Phosphohydrolase (MutT/nudix family protein) (NCBI ptt file)||141, 405|
|BC2693||BC2693||DNA polymerase III, beta chain (NCBI ptt file)||197, 405|
|BC2789||BC2789||hypothetical protein (NCBI ptt file)||405, 495|
|BC3064||BC3064||Permease (NCBI ptt file)||282, 405|
|BC3367||BC3367||hypothetical protein (NCBI ptt file)||405, 434|
|BC3458||BC3458||XpaF1 protein (NCBI ptt file)||56, 123|
|BC3526||BC3526||Collagen adhesion protein (NCBI ptt file)||248, 405|
|BC3660||BC3660||hypothetical protein (NCBI ptt file)||123, 154|
|BC3941||BC3941||Cytochrome c oxidase polypeptide IVB (NCBI ptt file)||357, 405|
|BC3942||BC3942||Cytochrome c oxidase polypeptide III (NCBI ptt file)||357, 405|
|BC4006||BC4006||hypothetical Cytosolic Protein (NCBI ptt file)||123, 238|
|BC4071||BC4071||Sodium/proline symporter (NCBI ptt file)||321, 405|
|BC4288||BC4288||Membrane-attached cytochrome c550 (NCBI ptt file)||358, 405|
|BC4339||BC4339||LSU ribosomal protein L33P (NCBI ptt file)||46, 123|
|BC4450||BC4450||Phage integrase family protein (NCBI ptt file)||123, 464|
|BC4550||BC4550||Threonine transporter (NCBI ptt file)||379, 405|
|BC4609||BC4609||hypothetical Membrane Spanning Protein (NCBI ptt file)||158, 405|
|BC4718||BC4718||Molybdopterin (MPT) converting factor, subunit 1 (NCBI ptt file)||241, 405|
|BC4767||BC4767||hypothetical protein (NCBI ptt file)||218, 405|
|BC4768||BC4768||NIF3-related protein (NCBI ptt file)||23, 405|
|BC4779||BC4779||ABC transporter ATP-binding protein (NCBI ptt file)||123, 495|
|BC4788||BC4788||hypothetical protein (NCBI ptt file)||123, 487|
|BC5247||BC5247||hypothetical protein (NCBI ptt file)||123, 186|
|BC5250||BC5250||Competence transcription factor (NCBI ptt file)||123, 138|
|BC5253||BC5253||ABC transporter permease protein (NCBI ptt file)||327, 405|
|BC5255||BC5255||periplasmic component of efflux system (NCBI ptt file)||327, 405|
|BC5284||BC5284||ABC transporter permease protein (NCBI ptt file)||123, 284|
|BC5285||BC5285||Bacitracin transport ATP-binding protein bcrA (NCBI ptt file)||123, 487|
|BC5415||BC5415||hypothetical Cytosolic Protein (NCBI ptt file)||23, 405|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
- 2. Source gene
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