Organism : Clostridium acetobutylicum | Module List :
Barstar-like protein ribonuclease (barnase) inhibitor (NCBI ptt file)
Functional Annotations (1)
|Barstar, RNAse (barnase) inhibitor||cog/ cog|
Regulation information for CAC0844(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0844
|Barstar, RNAse (barnase) inhibitor||cog/ cog|
Module neighborhood information for CAC0844
|Gene||Common Name||Description||Module membership|
|CAC0019||CAC0019||Transcriptional regulator, AcrR family (NCBI ptt file)||73, 341|
|CAC0029||CAC0029||Distantly related to cell wall-associated hydrolases, similar to yycO Bacillus subtilis (NCBI ptt file)||67, 99|
|CAC0030||CAC0030||Hypothetical protein (NCBI ptt file)||67, 99|
|CAC0130||CAC0130||Uncharacterized membrane protein, YTAF B.subtilis ortholog (NCBI ptt file)||176, 341|
|CAC0140||CAC0140||Predicted permease (NCBI ptt file)||67, 114|
|CAC0142||CAC0142||Hypothetical protein (NCBI ptt file)||188, 341|
|CAC0270||CAC0270||Hypothetical protein (NCBI ptt file)||67, 225|
|CAC0288||CAC0288||ABC transporter, ATP-binding protein (NCBI ptt file)||67, 266|
|CAC0523||CAC0523||SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase (trmA family) (NCBI ptt file)||254, 341|
|CAC0686||CAC0686||Spore cortex-lytic enzyme prepeptide; peptodoglycan-binding domain (NCBI ptt file)||118, 341|
|CAC0830||CAC0830||Response regulator (NCBI ptt file)||67, 115|
|CAC0843||CAC0843||Ribonuclease precursor (barnase), secreted. (NCBI ptt file)||65, 67|
|CAC0844||CAC0844||Barstar-like protein ribonuclease (barnase) inhibitor (NCBI ptt file)||67, 341|
|CAC1264||lytR||Membrane bound transcriptional regulator of LytR family (NCBI ptt file)||67, 248|
|CAC1266||CAC1266||Pseudouridylate synthase family protein, yabo B.subtilis ortholog (NCBI ptt file)||67, 345|
|CAC1354||CAC1354||Phosphotransferase system IIA component (NCBI ptt file)||254, 341|
|CAC1388||manC||Mannose-6-phosphate isomerase (NCBI ptt file)||162, 341|
|CAC2040||CAC2040||ABC transported MDR-type, ATPase component (NCBI ptt file)||67, 248|
|CAC2122||CAC2122||Conserved membrane protein (NCBI ptt file)||67, 231|
|CAC2123||sbp||Small basic protein, sbp, uncharacterized (NCBI ptt file)||67, 128|
|CAC2124||CAC2124||Conserved membrane protein (NCBI ptt file)||67, 128|
|CAC2451||CAC2451||SoxR family transcriptional regulator fused to SAM-dependent methyltransferase (NCBI ptt file)||162, 341|
|CAC2502||CAC2502||Predicted permease (NCBI ptt file)||130, 341|
|CAC2515||CAC2515||Hypothetical protein (NCBI ptt file)||149, 341|
|CAC2556||CAC2556||Endoglucanase, family 26; S-layer homology domain (NCBI ptt file)||67, 184|
|CAC2571||CAC2571||Predicted acetyltransferase (NCBI ptt file)||67, 294|
|CAC2572||CAC2572||Possible aminoglycoside phosphotransferase (protein kinase related), diverged (NCBI ptt file)||67, 329|
|CAC2602||CAC2602||Spermidine synthase (NCBI ptt file)||110, 341|
|CAC2688||CAC2688||Alpha/beta superfamily hydrolase (possible chloroperoxidase) (NCBI ptt file)||67, 238|
|CAC2752||CAC2752||Uncharacterized membrane protein, YPAA B.subtilis ortholog (NCBI ptt file)||67, 218|
|CAC2786||CAC2786||Uncharacterized conserved protein, YQGV B.subtilis ortholog (NCBI ptt file)||67, 277|
|CAC2808||CAC2808||Beta-lactamase class C domain (PBPX family) containing protein (NCBI ptt file)||67, 248|
|CAC2823||CAC2823||Hypothetical protein (NCBI ptt file)||258, 341|
|CAC2982||CAC2982||MinD family ATPase (chromosome partitioning) (NCBI ptt file)||254, 341|
|CAC3005||add||Adenosine deaminase (NCBI ptt file)||40, 341|
|CAC3226||CAC3226||Predicted membrane protein (NCBI ptt file)||86, 341|
|CAC3256||CAC3256||Predicted acetyltransferase (NCBI ptt file)||123, 341|
|CAC3264||CAC3264||Uncharacterized conserved protein, YTFJ B.subtilis ortholog (NCBI ptt file)||4, 341|
|CAC3313||CAC3313||Acyl carrier protein, ACP (NCBI ptt file)||86, 341|
|CAC3341||CAC3341||Multimeric flavodoxin WrbA family protein (NCBI ptt file)||4, 341|
|CAC3450||CAC3450||Hypothetical protein (NCBI ptt file)||119, 341|
|CAC3491||CAC3491||Protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family) (NCBI ptt file)||312, 341|
|CAC3496||CAC3496||Predicted transcriptional regulator (NCBI ptt file)||179, 341|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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