Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2786(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2786
Module neighborhood information for CAC2786
|Gene||Common Name||Description||Module membership|
|CAC0029||CAC0029||Distantly related to cell wall-associated hydrolases, similar to yycO Bacillus subtilis (NCBI ptt file)||67, 99|
|CAC0030||CAC0030||Hypothetical protein (NCBI ptt file)||67, 99|
|CAC0140||CAC0140||Predicted permease (NCBI ptt file)||67, 114|
|CAC0270||CAC0270||Hypothetical protein (NCBI ptt file)||67, 225|
|CAC0288||CAC0288||ABC transporter, ATP-binding protein (NCBI ptt file)||67, 266|
|CAC0569||sacT||SACPA operon antiterminator (sacT) (NCBI ptt file)||149, 277|
|CAC0606||CAC0606||C-terminal region cation efflux system protein CZCD (NCBI ptt file)||52, 277|
|CAC0632||CAC0632||Predicted phosphatase (NCBI ptt file)||52, 277|
|CAC0687||cysE||Serine acetyltransferase (NCBI ptt file)||196, 277|
|CAC0830||CAC0830||Response regulator (NCBI ptt file)||67, 115|
|CAC0843||CAC0843||Ribonuclease precursor (barnase), secreted. (NCBI ptt file)||65, 67|
|CAC0844||CAC0844||Barstar-like protein ribonuclease (barnase) inhibitor (NCBI ptt file)||67, 341|
|CAC0902||CAC0902||Predicted membrane protein (NCBI ptt file)||134, 277|
|CAC0903||CAC0903||Sensory transduction histidine kinase (NCBI ptt file)||134, 277|
|CAC0983||CAC0983||Hypothetical protein (NCBI ptt file)||52, 277|
|CAC1023||nadC||Nicotinate-nucleotide pyrophosphorylase (NCBI ptt file)||277, 280|
|CAC1096||CAC1096||Uncharacterized protein, YjiN homolog (NCBI ptt file)||277, 348|
|CAC1263||CAC1263||HD superfamily hydrolase, yqeK B.subtilis ortholog (NCBI ptt file)||248, 277|
|CAC1264||lytR||Membrane bound transcriptional regulator of LytR family (NCBI ptt file)||67, 248|
|CAC1266||CAC1266||Pseudouridylate synthase family protein, yabo B.subtilis ortholog (NCBI ptt file)||67, 345|
|CAC1833||CAC1833||Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog (NCBI ptt file)||58, 277|
|CAC1854||CAC1854||Nudix (MutT) family hydrolase (NCBI ptt file)||209, 277|
|CAC1909||rnd||Ribonuclease D (NCBI ptt file)||225, 277|
|CAC1910||CAC1910||Predicted membrane protein (NCBI ptt file)||225, 277|
|CAC2040||CAC2040||ABC transported MDR-type, ATPase component (NCBI ptt file)||67, 248|
|CAC2122||CAC2122||Conserved membrane protein (NCBI ptt file)||67, 231|
|CAC2123||sbp||Small basic protein, sbp, uncharacterized (NCBI ptt file)||67, 128|
|CAC2124||CAC2124||Conserved membrane protein (NCBI ptt file)||67, 128|
|CAC2127||mraY||Phospho-N-acetylmuramoyl-pentapeptide transferase, MraY (NCBI ptt file)||2, 277|
|CAC2556||CAC2556||Endoglucanase, family 26; S-layer homology domain (NCBI ptt file)||67, 184|
|CAC2571||CAC2571||Predicted acetyltransferase (NCBI ptt file)||67, 294|
|CAC2572||CAC2572||Possible aminoglycoside phosphotransferase (protein kinase related), diverged (NCBI ptt file)||67, 329|
|CAC2688||CAC2688||Alpha/beta superfamily hydrolase (possible chloroperoxidase) (NCBI ptt file)||67, 238|
|CAC2752||CAC2752||Uncharacterized membrane protein, YPAA B.subtilis ortholog (NCBI ptt file)||67, 218|
|CAC2784||CAC2784||Signal peptidase type IV (NCBI ptt file)||134, 277|
|CAC2786||CAC2786||Uncharacterized conserved protein, YQGV B.subtilis ortholog (NCBI ptt file)||67, 277|
|CAC2808||CAC2808||Beta-lactamase class C domain (PBPX family) containing protein (NCBI ptt file)||67, 248|
|CAC2836||CAC2836||Zn-binding lipoprotein related (surface adhesin A), ADHS (NCBI ptt file)||52, 277|
|CAC3292||CAC3292||NifU homolog involved in Fe-S cluster formation (NCBI ptt file)||209, 277|
|CAC3360||CAC3360||Transcriptional regulator, LysR family (NCBI ptt file)||176, 277|
|CAC3600||dapA||Dihydrodipicolinate synthase (NCBI ptt file)||176, 277|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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