Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1542(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1542
|Gene||Common Name||Description||Module membership|
|CAC0002||dnaN||DNA polymerase III beta subunit (NCBI ptt file)||3, 283|
|CAC0003||CAC0003||Small conserved protein, ortholog of YAAA B.subtilis (NCBI ptt file)||105, 278|
|CAC0007||gyrA||DNA gyrase (topoisomerase II) A subunit (NCBI ptt file)||29, 278|
|CAC0010||CAC0010||Uncharacterized conserved protein, possible metal-binding (NCBI ptt file)||283, 312|
|CAC0111||CAC0111||Glutamine-binding periplasmic protein fused to glutamine permease (NCBI ptt file)||106, 278|
|CAC0174||CAC0174||Response regulator, CheY-like receiver domain and HTH DNA-binding domain (NCBI ptt file)||140, 283|
|CAC0178||appC||Oligopeptide transport permease protein (NCBI ptt file)||278, 314|
|CAC0180||appF||Oligopeptide ABC transporter, ATP-binding protein (NCBI ptt file)||179, 278|
|CAC0282||CAC0282||Cytosine/guanine deaminase related protein (NCBI ptt file)||283, 366|
|CAC0458||CAC0458||Permease (NCBI ptt file)||283, 286|
|CAC0627||CAC0627||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||278, 283|
|CAC0655||CAC0655||Hypothetical protein, CF-26 family (NCBI ptt file)||278, 318|
|CAC0702||CAC0702||Predicted lipoprotein, Med/BMP family (NCBI ptt file)||58, 278|
|CAC0714||secG||Membrane protein secG involved in protein secretion (NCBI ptt file)||25, 278|
|CAC0728||CAC0728||SAM-dependent methyltransferase (NCBI ptt file)||72, 283|
|CAC1292||CAC1292||Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog (NCBI ptt file)||51, 283|
|CAC1419||CAC1419||Uncharacterized proteins, homologs of microcin C7 resistance protein MccF (NCBI ptt file)||283, 346|
|CAC1453||rbsB||Ribose ABC transporter (ribose-binding periplasmic component) (NCBI ptt file)||235, 278|
|CAC1467||CAC1467||Transcriptional regulator, Lrp family (NCBI ptt file)||178, 278|
|CAC1542||CAC1542||Predicted membrane protein (NCBI ptt file)||278, 283|
|CAC1651||CAC1651||Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) (NCBI ptt file)||109, 283|
|CAC1731||CAC1731||Predicted nucleotide-binding protein, YLOS B.subtilis ortholog (NCBI ptt file)||2, 278|
|CAC1749||CAC1749||BioB/LipA-like protein (NCBI ptt file)||5, 283|
|CAC1750||CAC1750||SpoVS-related protein (NCBI ptt file)||29, 278|
|CAC2116||CAC2116||General stress protein, DnaK suppressor DskA, YTEA B.subtilis ortholog (NCBI ptt file)||239, 283|
|CAC2129||murE||UDP-N-acetylmuramyl tripeptide synthase, MurE (NCBI ptt file)||2, 283|
|CAC2169||CAC2169||UDP-galactopyranose mutase (NCBI ptt file)||283, 286|
|CAC2170||CAC2170||Predicted membrane protein (NCBI ptt file)||282, 283|
|CAC2231||murG||Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase, MurG (NCBI ptt file)||283, 286|
|CAC2261||CAC2261||HD-hydrolase domain containing protein, YHAM B.subtilis ortholog (NCBI ptt file)||38, 278|
|CAC2306||CAC2306||Sporulation-specific sigma factor F (NCBI ptt file)||164, 278|
|CAC2307||CAC2307||Sigma factor F inhibitor spoIIAB (anti-sigma factor) (NCBI ptt file)||164, 278|
|CAC2321||CAC2321||Predicted glycosyltransferase (NCBI ptt file)||63, 278|
|CAC2410||recX||Uncharacterized protein recX (NCBI ptt file)||282, 283|
|CAC2413||CAC2413||Predicted membrane protein (NCBI ptt file)||105, 283|
|CAC2414||CAC2414||Uncharacterized conserved protein, related to alpha-amylase/alpha-mannosidase (NCBI ptt file)||283, 345|
|CAC2635||CAC2635||Hypothetical protein (NCBI ptt file)||80, 278|
|CAC2724||CAC2724||Hypothetical protein (NCBI ptt file)||51, 278|
|CAC2727||CAC2727||Predicted PHP family hydrolase (NCBI ptt file)||53, 278|
|CAC2854||recD||ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecD (NCBI ptt file)||278, 286|
|CAC3089||CAC3089||Hypothetical protein (NCBI ptt file)||3, 283|
|CAC3185||CAC3185||Membrane-associated protein containing a homolog of PilT-like ATPase N-terminal domain, YACL B.subtilis ortholog (NCBI ptt file)||283, 295|
|CAC3203||hprT||Hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file)||58, 283|
|CAC3207||CAC3207||Hypothetical protein (NCBI ptt file)||25, 283|
|CAC3216||mfd||Transcription-repair coupling factor, MFD (superfamily II helicase ) (NCBI ptt file)||58, 283|
|CAC3400||CAC3400||Predicted dehydrogenase (NCBI ptt file)||72, 283|
|CAC3465||CAC3465||Amidase from nicotinamidase family (NCBI ptt file)||115, 283|
|CAC3466||CAC3466||Transcriptional regulator, LysR family (NCBI ptt file)||115, 283|
|CAC3467||CAC3467||Uncharacterized conserved protein, phnB family (NCBI ptt file)||115, 283|
|CAC3657||CAC3657||NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NCBI ptt file)||239, 283|
|CAC3673||xylR||XylR transcriptional regulator (NCBI ptt file)||72, 283|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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