Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2116(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2116
Module neighborhood information for CAC2116
|Gene||Common Name||Description||Module membership|
|CAC0002||dnaN||DNA polymerase III beta subunit (NCBI ptt file)||3, 283|
|CAC0010||CAC0010||Uncharacterized conserved protein, possible metal-binding (NCBI ptt file)||283, 312|
|CAC0033||CAC0033||ABC1 family protein kinase (NCBI ptt file)||87, 239|
|CAC0174||CAC0174||Response regulator, CheY-like receiver domain and HTH DNA-binding domain (NCBI ptt file)||140, 283|
|CAC0282||CAC0282||Cytosine/guanine deaminase related protein (NCBI ptt file)||283, 366|
|CAC0327||CAC0327||Bacterioferritin comigratory protein (AHPC/TSA family) (NCBI ptt file)||239, 325|
|CAC0458||CAC0458||Permease (NCBI ptt file)||283, 286|
|CAC0482||CAC0482||Zn-dependent hydrolases of the metallo-beta-lactamase superfamily (NCBI ptt file)||225, 239|
|CAC0627||CAC0627||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||278, 283|
|CAC0636||CAC0636||Signal transduction protein containing diguanilate cyclase/phosphodiesterase domain (GGDEF) (NCBI ptt file)||87, 239|
|CAC0728||CAC0728||SAM-dependent methyltransferase (NCBI ptt file)||72, 283|
|CAC1292||CAC1292||Membrane protein containing HD superfamily hydrolase domain, YQFF ortholog (NCBI ptt file)||51, 283|
|CAC1419||CAC1419||Uncharacterized proteins, homologs of microcin C7 resistance protein MccF (NCBI ptt file)||283, 346|
|CAC1449||CAC1449||Hypothetical protein (NCBI ptt file)||239, 356|
|CAC1542||CAC1542||Predicted membrane protein (NCBI ptt file)||278, 283|
|CAC1577||CAC1577||Ncharacterized conserved protein (NCBI ptt file)||71, 239|
|CAC1651||CAC1651||Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) (NCBI ptt file)||109, 283|
|CAC1681||CAC1681||Hypothetical protein (NCBI ptt file)||239, 289|
|CAC1683||CAC1683||Predicted metal-dependent hydrolase of metallo-beta-lactamase superfamily (NCBI ptt file)||239, 276|
|CAC1749||CAC1749||BioB/LipA-like protein (NCBI ptt file)||5, 283|
|CAC1795||CAC1795||1-deoxy-D-xylulose 5-phosphate reductoisomerase (NCBI ptt file)||87, 239|
|CAC2116||CAC2116||General stress protein, DnaK suppressor DskA, YTEA B.subtilis ortholog (NCBI ptt file)||239, 283|
|CAC2117||pfs||Nucleoside phosphorylase (NCBI ptt file)||239, 286|
|CAC2129||murE||UDP-N-acetylmuramyl tripeptide synthase, MurE (NCBI ptt file)||2, 283|
|CAC2131||CAC2131||Hypothetical protein (NCBI ptt file)||239, 289|
|CAC2132||CAC2132||Predicted S-adenosylmethionine-dependent methyltransferase, involved in cell envelope biogenesis YLXA B.subtilis ortholog (NCBI ptt file)||201, 239|
|CAC2169||CAC2169||UDP-galactopyranose mutase (NCBI ptt file)||283, 286|
|CAC2170||CAC2170||Predicted membrane protein (NCBI ptt file)||282, 283|
|CAC2231||murG||Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase, MurG (NCBI ptt file)||283, 286|
|CAC2301||mrcB||Membrane carboxypeptidase mrcB (NCBI ptt file)||239, 345|
|CAC2332||spsJ||DTDP-D-glucose 4,6-dehydratase (NCBI ptt file)||20, 239|
|CAC2410||recX||Uncharacterized protein recX (NCBI ptt file)||282, 283|
|CAC2413||CAC2413||Predicted membrane protein (NCBI ptt file)||105, 283|
|CAC2414||CAC2414||Uncharacterized conserved protein, related to alpha-amylase/alpha-mannosidase (NCBI ptt file)||283, 345|
|CAC2889||rho||Transcription termination factor rho (NCBI ptt file)||20, 239|
|CAC3089||CAC3089||Hypothetical protein (NCBI ptt file)||3, 283|
|CAC3185||CAC3185||Membrane-associated protein containing a homolog of PilT-like ATPase N-terminal domain, YACL B.subtilis ortholog (NCBI ptt file)||283, 295|
|CAC3203||hprT||Hypoxanthine-guanine phosphoribosyltransferase (NCBI ptt file)||58, 283|
|CAC3207||CAC3207||Hypothetical protein (NCBI ptt file)||25, 283|
|CAC3216||mfd||Transcription-repair coupling factor, MFD (superfamily II helicase ) (NCBI ptt file)||58, 283|
|CAC3231||CAC3231||Predicted phosphatase, HAD superfamily (NCBI ptt file)||239, 295|
|CAC3400||CAC3400||Predicted dehydrogenase (NCBI ptt file)||72, 283|
|CAC3418||CAC3418||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||239, 289|
|CAC3465||CAC3465||Amidase from nicotinamidase family (NCBI ptt file)||115, 283|
|CAC3466||CAC3466||Transcriptional regulator, LysR family (NCBI ptt file)||115, 283|
|CAC3467||CAC3467||Uncharacterized conserved protein, phnB family (NCBI ptt file)||115, 283|
|CAC3569||accD||Acetyl-CoA carboxylase beta subunit (NCBI ptt file)||182, 239|
|CAC3632||oppA||Oligopeptide ABC transporter, periplasmic substrate-binding component (NCBI ptt file)||87, 239|
|CAC3657||CAC3657||NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (NCBI ptt file)||239, 283|
|CAC3673||xylR||XylR transcriptional regulator (NCBI ptt file)||72, 283|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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