Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1621(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC1621
Module neighborhood information for CAC1621
|Gene||Common Name||Description||Module membership|
|CAC0055||CAC0055||Uncharacterized predicted metal-binding protein, ortholog of Streptomyces (2808777) (NCBI ptt file)||71, 185|
|CAC0220||CAC0220||Hypothetical protein (NCBI ptt file)||49, 261|
|CAC0371||CAC0371||Response regulator (CheY-like domain and HTH domain) (NCBI ptt file)||71, 287|
|CAC0417||CAC0417||Similar to arsenate reductase (NCBI ptt file)||71, 185|
|CAC0418||CAC0418||Predicted phosphatase, HAD family (NCBI ptt file)||261, 287|
|CAC0536||dltE||Short-chain dehydrodenase (gene dltE) (NCBI ptt file)||71, 108|
|CAC0549||CAC0549||Predicted transcriptional regulator (NCBI ptt file)||74, 261|
|CAC0600||CAC0600||Predicted membrane protein (NCBI ptt file)||10, 71|
|CAC0745||CAC0745||Transcriptional regulator, LysR family (NCBI ptt file)||71, 83|
|CAC0825||CAC0825||Endoglucanase family 5 (NCBI ptt file)||225, 261|
|CAC0858||CAC0858||Phosphinothricin acetyltransferase (NCBI ptt file)||71, 216|
|CAC0871||CAC0871||Hypothetical protein (NCBI ptt file)||157, 261|
|CAC1037||CAC1037||Predicted xylanase/chitin deacetylase (NCBI ptt file)||206, 261|
|CAC1046||CAC1046||Transcriptional regulator, LysR family (NCBI ptt file)||71, 287|
|CAC1340||araR||Transcriptional regulator of the LacI family (NCBI ptt file)||259, 261|
|CAC1436||CAC1436||Hypothetical protein (NCBI ptt file)||261, 348|
|CAC1493||CAC1493||Zn-finger DNA-binding domain (NCBI ptt file)||71, 74|
|CAC1494||CAC1494||Hypothetical protein, CF-32 family (NCBI ptt file)||157, 261|
|CAC1496||CAC1496||Uncharacterized protein, homolog of YCGL B.subtilis (NCBI ptt file)||71, 137|
|CAC1502||CAC1502||Hypothetical protein (NCBI ptt file)||71, 346|
|CAC1540||CAC1540||Uncharacterized ATP-grasp enzyme (NCBI ptt file)||71, 91|
|CAC1577||CAC1577||Ncharacterized conserved protein (NCBI ptt file)||71, 239|
|CAC1618||CAC1618||Hypothetical protein (NCBI ptt file)||71, 132|
|CAC1619||CAC1619||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC1621||CAC1621||Predicted Fe-S oxidoreductase (NCBI ptt file)||71, 261|
|CAC1622||CAC1622||Pyridoxal kinase related protein (NCBI ptt file)||64, 261|
|CAC1948||CAC1948||Hypothetical protein (NCBI ptt file)||117, 261|
|CAC1949||CAC1949||Possible TPR-repeat contaning protein (NCBI ptt file)||117, 261|
|CAC1962||CAC1962||Predicted esterase of alpha/beta hydrolase superfamily, YBBA B.subtilis ortholog (NCBI ptt file)||71, 72|
|CAC2364||CAC2364||Uncharacterized protein, homolog of gi|2274936 Eubacterium acidaminophilum (NCBI ptt file)||158, 261|
|CAC2429||CAC2429||Predicted membrane protein (NCBI ptt file)||259, 261|
|CAC2472||CAC2472||Alpha/beta superfamily hydrolase (NCBI ptt file)||261, 287|
|CAC2475||CAC2475||Possible 5-Nitroimidazole antibiotics resistance protein, NimA-family (NCBI ptt file)||261, 276|
|CAC2496||CAC2496||Predicted phosphatase of HAD hydrolase superfamily (NCBI ptt file)||158, 261|
|CAC2520||CAC2520||Multimeric flavodoxin (WrbA) domain containing protein (NCBI ptt file)||49, 71|
|CAC2568||CAC2568||Predicted transcriptional regulator (NCBI ptt file)||71, 223|
|CAC2734||CAC2734||ABC-type multidrug transport system, ATPase component (NCBI ptt file)||71, 98|
|CAC2759||CAC2759||Response regulator (CheY receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||71, 185|
|CAC2832||CAC2832||PLP-dependent aminotransferase (NCBI ptt file)||261, 356|
|CAC2930||CAC2930||Uncharacterized conserved membrane protein (NCBI ptt file)||71, 223|
|CAC2931||CAC2931||Uncharacterized conserved membrane protein (NCBI ptt file)||71, 223|
|CAC2962||CAC2962||Transcriptional regulators of the LacI family (NCBI ptt file)||261, 346|
|CAC2986||ksgA||Dimethyladenosine transferase (NCBI ptt file)||157, 261|
|CAC3279||CAC3279||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||209, 261|
|CAC3303||CAC3303||Superfamily II DNA/RNA helicases, SNF2 family (NCBI ptt file)||71, 294|
|CAC3387||CAC3387||Pectate lyase (NCBI ptt file)||83, 261|
|CAC3516||CAC3516||Membrane-associated histidine kinase with HAMP domain (NCBI ptt file)||261, 326|
|CAC3529||CAC3529||Hypothetical protein (NCBI ptt file)||71, 259|
|CAC3530||CAC3530||Hypothetical protein (NCBI ptt file)||71, 259|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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