Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1912(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1912
|Gene||Common Name||Description||Module membership|
|CAC0046||CAC0046||Hypothetical protein, CF-2 family (NCBI ptt file)||264, 366|
|CAC0179||appD||Oligopeptide transport ATP-binding protein (NCBI ptt file)||314, 366|
|CAC0188||nagA||N-acetylglucosamine-6-phosphate deacetylase (gene nagA) (NCBI ptt file)||44, 366|
|CAC0192||CAC0192||Similar to chloromuconate cycloisomerase (NCBI ptt file)||248, 366|
|CAC0209||CAC0209||Predicted membrane protein; CF-20 family (NCBI ptt file)||82, 366|
|CAC0211||bioY||BioY protein precursor (NCBI ptt file)||199, 366|
|CAC0215||CAC0215||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||22, 366|
|CAC0281||CAC0281||Molybdate-binding periplasmic protein (NCBI ptt file)||363, 366|
|CAC0282||CAC0282||Cytosine/guanine deaminase related protein (NCBI ptt file)||283, 366|
|CAC0547||CAC0547||Lactoylglutation lyase (NCBI ptt file)||346, 366|
|CAC0696||CAC0696||Putative altronate dehydratase (NCBI ptt file)||170, 366|
|CAC1364||CAC1364||Enzyme from phospholipase D family, possible endonuclease nuc (NCBI ptt file)||204, 366|
|CAC1552||CAC1552||Response regulator (CheY-like receiver domain and HTH DNA-binding domain) (NCBI ptt file)||44, 366|
|CAC1588||CAC1588||Malolactic regulator, LysR family (NCBI ptt file)||174, 366|
|CAC1663||CAC1663||Hypothetical protein (NCBI ptt file)||73, 366|
|CAC1842||CAC1842||Uncharacterized protein, B.subtilis YTKC ortholog, related to regulatory protein UTXA (NCBI ptt file)||280, 366|
|CAC1875||CAC1875||Hypothetical protein, CF-36 family (NCBI ptt file)||121, 180|
|CAC1876||lyc||N-acetylmuramidase, autolytic enzyme, family 25 of glycosyl hydrolases ; peptodoglycan-binding domain (NCBI ptt file)||121, 180|
|CAC1877||CAC1877||Hypothetical protein, CF-8 family (NCBI ptt file)||121, 180|
|CAC1878||CAC1878||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1879||CAC1879||Uncharacterized, phage-related protein (NCBI ptt file)||121, 180|
|CAC1880||CAC1880||Hypothetical protein, CF-35 family (NCBI ptt file)||121, 180|
|CAC1881||CAC1881||Hypothetical protein (NCBI ptt file)||121, 332|
|CAC1882||CAC1882||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1883||CAC1883||Uncharacterized phage related protein (NCBI ptt file)||121, 180|
|CAC1884||CAC1884||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1885||CAC1885||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1886||CAC1886||Uncharacterized phage related protein (NCBI ptt file)||121, 180|
|CAC1887||CAC1887||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1888||CAC1888||Uncharacterized phage related protein (NCBI ptt file)||121, 180|
|CAC1889||CAC1889||Uncharacterized phage related protein (NCBI ptt file)||121, 180|
|CAC1890||CAC1890||Phage related protein, possible DNA packing (NCBI ptt file)||121, 180|
|CAC1896||CAC1896||Phage terminase-like protein, small subunit (NCBI ptt file)||121, 180|
|CAC1897||CAC1897||Phage-related, Zn finger domain containing protein (NCBI ptt file)||121, 180|
|CAC1898||CAC1898||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1899||CAC1899||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1902||CAC1902||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1903||CAC1903||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1904||CAC1904||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1905||CAC1905||Hypothetical protein (NCBI ptt file)||121, 171|
|CAC1906||CAC1906||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1907||CAC1907||Hypothetical protein (NCBI ptt file)||121, 180|
|CAC1908||CAC1908||Predicted membrane protein (NCBI ptt file)||121, 180|
|CAC1912||CAC1912||Uncharacterized phage related protein (NCBI ptt file)||121, 366|
|CAC1913||CAC1913||Zn-finger containing protein (NCBI ptt file)||121, 180|
|CAC1939||CAC1939||Hypothetical protein (NCBI ptt file)||54, 366|
|CAC1946||CAC1946||Phage related transcriptional regulator (Xre family) (NCBI ptt file)||121, 332|
|CAC2043||CAC2043||Hypothetical protein (NCBI ptt file)||235, 366|
|CAC2831||CAC2831||Conserved membrane protein, YccA family (NCBI ptt file)||312, 366|
|CAC2915||panC||Pantoate--beta-alanine ligase (NCBI ptt file)||235, 366|
|CAC2916||panD||Aspartate 1-decarboxylase (NCBI ptt file)||235, 366|
|CAC3377||CAC3377||Xylanase/chitin deacetylase family enzyme (NCBI ptt file)||244, 366|
|CAC3427||CAC3427||PTS system, (possibly glucose-specific) IIA component (NCBI ptt file)||73, 366|
|CAC3436||CAC3436||Probable alpha-arabinofuranosidase (NCBI ptt file)||314, 366|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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