Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1920(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1920
|Gene||Common Name||Description||Module membership|
|CAC0050||CAC0050||Hypothetical protein, CF-3 family K28 (NCBI ptt file)||183, 246|
|CAC0051||CAC0051||Hypothetical protein, CF-3 family (NCBI ptt file)||224, 246|
|CAC0067||CAC0067||(FS) similar to ABC transporter (permease), YXDM B.subtilis ortholog (NCBI ptt file)||176, 246|
|CAC0068||CAC0068||(FS) similar to ABC transporter (permease), YXDM B.subtilis ortholog (NCBI ptt file)||40, 246|
|CAC0349||CAC0349||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC0484||CAC0484||Phosphomannomutase (NCBI ptt file)||40, 246|
|CAC0652||CAC0652||Uncharacterized conserved membrane protein, similar to MDR (VANZ) ORF of Enterococcus (NCBI ptt file)||246, 353|
|CAC0780||tyrZ||Tyrosyl-tRNA synthetase (NCBI ptt file)||246, 306|
|CAC1167||CAC1167||Hypothetical protein (NCBI ptt file)||246, 351|
|CAC1188||CAC1188||Hypothetical protein (NCBI ptt file)||187, 246|
|CAC1213||CAC1213||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC1397||CAC1397||Predicted hydrolase of PHP superfamily (NCBI ptt file)||246, 306|
|CAC1400||CAC1400||ABC transporter, periplasmic binding component (NCBI ptt file)||246, 306|
|CAC1401||CAC1401||ABC transporter, ATPase component (NCBI ptt file)||246, 306|
|CAC1780||CAC1780||Nicotinic acid phosphoribosyltransferase (NCBI ptt file)||246, 306|
|CAC1782||nadE||NH(3)-dependent NAD(+) synthase (nadE) fused to amidohydrolase domain (NCBI ptt file)||246, 306|
|CAC1872||repB||Replication initiation protein REP (NCBI ptt file)||54, 342|
|CAC1895||CAC1895||Phage terminase-like protein, large subunit (NCBI ptt file)||54, 332|
|CAC1900||CAC1900||Phage regulatory Com-like protein, containing Zn-finger (NCBI ptt file)||54, 171|
|CAC1901||CAC1901||Hypothetical protein (NCBI ptt file)||54, 342|
|CAC1915||CAC1915||Hypothetical protein (NCBI ptt file)||54, 175|
|CAC1916||CAC1916||Hypothetical protein (NCBI ptt file)||54, 332|
|CAC1917||CAC1917||Hypothetical protein (NCBI ptt file)||54, 175|
|CAC1918||CAC1918||Hypothetical protein (NCBI ptt file)||54, 332|
|CAC1920||CAC1920||Zn-finger containing protein (NCBI ptt file)||54, 246|
|CAC1921||CAC1921||Hypothetical protein (NCBI ptt file)||54, 117|
|CAC1922||CAC1922||Hypothetical protein (NCBI ptt file)||117, 246|
|CAC1923||CAC1923||Hypothetical protein (NCBI ptt file)||54, 175|
|CAC1928||CAC1928||Hypothetical protein (NCBI ptt file)||54, 175|
|CAC1931||CAC1931||Hypothetical protein (NCBI ptt file)||54, 175|
|CAC1934||CAC1934||Hypothetical protein (NCBI ptt file)||54, 284|
|CAC1937||CAC1937||Hypothetical protein (NCBI ptt file)||54, 284|
|CAC1938||CAC1938||Predicted HD superfamily hydrolase (NCBI ptt file)||54, 284|
|CAC1939||CAC1939||Hypothetical protein (NCBI ptt file)||54, 366|
|CAC1942||CAC1942||Hypothetical protein (NCBI ptt file)||54, 342|
|CAC1944||CAC1944||Hypothetical protein (NCBI ptt file)||54, 332|
|CAC1945||CAC1945||Phage related anti-repressor protein (NCBI ptt file)||54, 171|
|CAC2051||CAC2051||Predicted membrane protein (NCBI ptt file)||246, 336|
|CAC2100||CAC2100||Hypothetical protein (NCBI ptt file)||54, 282|
|CAC2101||CAC2101||Hypothetical protein (NCBI ptt file)||54, 333|
|CAC2102||CAC2102||Prepilin peptidase (NCBI ptt file)||54, 312|
|CAC2103||CAC2103||General secretion pathway protein, pilin family (NCBI ptt file)||54, 320|
|CAC2104||CAC2104||General secretion pathway protein F (NCBI ptt file)||54, 282|
|CAC2106||CAC2106||Predicted membrane protein (NCBI ptt file)||54, 282|
|CAC3404||CAC3404||Uncharactecterized conserved membrane protein, possible ABC-type MDR permease (NCBI ptt file)||246, 351|
|CAC3666||CAC3666||Membrane transporters of cations and cationic drugs (NCBI ptt file)||132, 246|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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