Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1995(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1995
|Gene||Common Name||Description||Module membership|
|CAC0075||CAC0075||Ferredoxin (NCBI ptt file)||69, 150|
|CAC0136||CAC0136||Hypothetical protein (NCBI ptt file)||69, 205|
|CAC0137||CAC0137||Hypothetical protein, CF-5 family (NCBI ptt file)||69, 205|
|CAC0501||bacA||Bacitracin resistance protein (bacA) (NCBI ptt file)||69, 300|
|CAC0859||CAC0859||Ortholog putative anti-SigV factor [Bacillus subtilis] (NCBI ptt file)||69, 344|
|CAC1012||CAC1012||Uncharacterized membrane protein, homolog of YNGA/YWCD B.suntilis (NCBI ptt file)||13, 69|
|CAC1022||CAC1022||Thioesterase II of alpha/beta hydrolase superfamily (NCBI ptt file)||166, 322|
|CAC1399||CAC1399||ABC transporter, permease component (NCBI ptt file)||69, 306|
|CAC1464||CAC1464||UVRA-like protein, probably involved in MDR transport (NCBI ptt file)||4, 166|
|CAC1555||CAC1555||Flagellin (NCBI ptt file)||53, 69|
|CAC1592||CAC1592||Predicted permease, YCGR B.subtilis ortholog (NCBI ptt file)||69, 345|
|CAC1593||CAC1593||Zn-binding lipoprotein related (surface adhesin A), ADHS (NCBI ptt file)||69, 282|
|CAC1614||CAC1614||Predicted glycosyltransferase (NCBI ptt file)||69, 117|
|CAC1615||CAC1615||Predicted glycosyltransferase (NCBI ptt file)||69, 82|
|CAC1645||CAC1645||Ankyrin repeats containing protein (NCBI ptt file)||69, 102|
|CAC1763||CAC1763||Predicted endonuclease (NCBI ptt file)||166, 270|
|CAC1963||CAC1963||5'-nucleotidase/2',3'-cyclic phosphodiesterase related enzyme (NCBI ptt file)||69, 205|
|CAC1990||CAC1990||ABC-type iron (III) transport system, permease component (NCBI ptt file)||166, 294|
|CAC1992||moaC||Molybdenum cofactor biosynthesis enzyme, MoaC (NCBI ptt file)||68, 166|
|CAC1995||CAC1995||Hypothetical protein (NCBI ptt file)||69, 166|
|CAC2001||iorA||Indolepyruvate ferredoxin oxidoreductase, subunit alpha (NCBI ptt file)||97, 166|
|CAC2003||CAC2003||Predicted permease (NCBI ptt file)||97, 166|
|CAC2005||CAC2005||Siderophore/Surfactin synthetase related protein (NCBI ptt file)||97, 166|
|CAC2009||mmgB||3-Hydroxyacyl-CoA dehydrogenase (NCBI ptt file)||97, 166|
|CAC2010||CAC2010||Predicted Fe-S oxidoreductase (NCBI ptt file)||97, 166|
|CAC2014||CAC2014||Predicted esterase (NCBI ptt file)||97, 166|
|CAC2019||CAC2019||Malonyl CoA-acyl carrier protein transacylase (NCBI ptt file)||166, 238|
|CAC2096||CAC2096||Hypothetical protein (NCBI ptt file)||69, 312|
|CAC2177||CAC2177||Ucharacterized protein, CGEB homolog (NCBI ptt file)||69, 361|
|CAC2257||CAC2257||Hypothetical protein (NCBI ptt file)||4, 69|
|CAC2288||CAC2288||Acyl-protein synthetase, luxE (NCBI ptt file)||166, 314|
|CAC2400||CAC2400||Serine/threonine kinase related protein, inactivated (HRDL motif absent) (fragment) (NCBI ptt file)||69, 137|
|CAC2402||CAC2402||TPR repeats containing protein (NCBI ptt file)||69, 102|
|CAC2419||CAC2419||Methyl-accepting chemotaxis protein (NCBI ptt file)||69, 205|
|CAC2560||CAC2560||Predicted acetyltransferase (NCBI ptt file)||69, 190|
|CAC2732||CAC2732||ABC transporter, ATPase component (NCBI ptt file)||69, 359|
|CAC2733||CAC2733||Uncharacterized conserved membrane protein (NCBI ptt file)||69, 74|
|CAC2877||CAC2877||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||69, 344|
|CAC2878||CAC2878||ABC-type iron (III) transport system, permease component (NCBI ptt file)||69, 322|
|CAC3198||greA||Transcription elongation factor, greA (NCBI ptt file)||166, 224|
|CAC3385||CAC3385||Hypothetical protein (NCBI ptt file)||69, 205|
|CAC3488||CAC3488||Predicted transcriptional regulator (NCBI ptt file)||69, 208|
|CAC3489||CAC3489||Hypothetical protein (NCBI ptt file)||69, 74|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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