Organism : Clostridium acetobutylicum | Module List :
Extracellular neutral metalloprotease, NPRE, fused to ChW-repeats (NCBI ptt file)
Functional Annotations (5)
|Zinc metalloprotease (elastase)||cog/ cog|
|metalloendopeptidase activity||go/ molecular_function|
|extracellular region||go/ cellular_component|
|zinc ion binding||go/ molecular_function|
Regulation information for CAC2290(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2290
Module neighborhood information for CAC2290
|Gene||Common Name||Description||Module membership|
|CAC0169||CAC0169||ABC transporter (ATP-binding protein) (NCBI ptt file)||169, 202|
|CAC0170||CAC0170||Predicted permease (NCBI ptt file)||169, 202|
|CAC0171||CAC0171||Predicted permease (NCBI ptt file)||169, 202|
|CAC0258||nifE||Nitrogenase iron-molibdenum cofactor biosinthesis protein, gene nifE (NCBI ptt file)||161, 347|
|CAC0339||CAC0339||ADP-ribosylglycohydrolase (NCBI ptt file)||148, 202|
|CAC0427||CAC0427||Glycerol-3-phosphate ABC-transporter, permease component (NCBI ptt file)||144, 161|
|CAC0429||CAC0429||Glicerol-3-phosphate ABC-transporter, periplasmic component (NCBI ptt file)||144, 161|
|CAC0529||CAC0529||Acetylxylan esterase related enzyme (NCBI ptt file)||202, 327|
|CAC0608||lisA||Diaminopimelate decarboxilase, lisA (NCBI ptt file)||202, 223|
|CAC0797||CAC0797||Phosphoenolpyruvate synthase (NCBI ptt file)||202, 212|
|CAC0798||CAC0798||Phosphatidylserine synthase (NCBI ptt file)||28, 202|
|CAC0818||CAC0818||Diguanylate cyclase/phosphodiesterase domain (GGDEF) containing protein (NCBI ptt file)||183, 202|
|CAC0828||CAC0828||Hypothetical protein (NCBI ptt file)||145, 202|
|CAC0913||CAC0913||Possible non-processive endoglucanase family 9, secreted; CelG ortholog; dockerin and cellulose-binding domain (NCBI ptt file)||161, 307|
|CAC0914||CAC0914||Cellulosome integrating cohesin-containing protein, secreted (NCBI ptt file)||111, 161|
|CAC0916||CAC0916||Possible non-processive endoglucanase family 9, secreted; CelG ortholog; dockerin and cellulose-binding domain (NCBI ptt file)||111, 161|
|CAC0917||CAC0917||and cellulose-binding endoglucanase family 9; CelL ortholog; dockerin domain (NCBI ptt file)||111, 161|
|CAC0918||CAC0918||Possible non-processive endoglucanase family 5, ortholog of mannase A, secreted; dockerin domain (NCBI ptt file)||111, 161|
|CAC0919||CAC0919||Probably secreted sialidase; several ASP-boxes and dockerin domain (NCBI ptt file)||161, 307|
|CAC1222||CAC1222||DNA-methyltransferase (cytosine-specific) (NCBI ptt file)||101, 161|
|CAC1327||CAC1327||Hypothetical protein (NCBI ptt file)||165, 202|
|CAC1774||sacB2||Levansucrase (NCBI ptt file)||111, 161|
|CAC2045||CAC2045||Secreted protein containing domain of murein hydrolase (MLTA homolog) (NCBI ptt file)||161, 307|
|CAC2047||CAC2047||Conjugative transfer gene TrsE homolog, ATPase (NCBI ptt file)||161, 347|
|CAC2290||nprE||Extracellular neutral metalloprotease, NPRE, fused to ChW-repeats (NCBI ptt file)||161, 202|
|CAC2455||CAC2455||Hypothetical protein, CF-13 family (NCBI ptt file)||202, 240|
|CAC2485||CAC2485||Predicted membane protein, probable cation efflux pump (MDR-type) (NCBI ptt file)||144, 161|
|CAC2532||CAC2532||Protein containing ChW-repeats (NCBI ptt file)||144, 202|
|CAC2548||CAC2548||Reductase/isomerase/elongation factor common domain (NCBI ptt file)||94, 202|
|CAC2813||CAC2813||Predicted integrase of XerC/XerD family (NCBI ptt file)||202, 338|
|CAC2935||CAC2935||Predicted acetyltransferase (NCBI ptt file)||120, 202|
|CAC3323||CAC3323||Predicted membrane protein (NCBI ptt file)||165, 202|
|CAC3443||bltR||Multidrug-efflux transporter transcription regulator, BltR (NCBI ptt file)||28, 202|
|CAC3663||CAC3663||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||202, 240|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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