Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2369(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2369
|Gene||Common Name||Description||Module membership|
|CAC0013||CAC0013||Uncharacterized small conserved protein, ortholog of T.maritima (4981999) and P.abyssi (5457704) (NCBI ptt file)||59, 253|
|CAC0027||pyrE||Orotate phosphoribosyltranspherase (NCBI ptt file)||84, 254|
|CAC0069||CAC0069||Predicted iron-binding protein, hemerythrin (NCBI ptt file)||212, 253|
|CAC0317||CAC0317||Sensory transduction histidine kinase (NCBI ptt file)||137, 253|
|CAC0481||nrdG||Anaerobic ribonucleoside-triphosphate reductase activating protein, gene nrdG (NCBI ptt file)||163, 253|
|CAC0495||thiC||Thiamine monophosphate syntase (NCBI ptt file)||90, 253|
|CAC0523||CAC0523||SAM-dependent methyltransferase related to tRNA(uracyl-5-)-methyltransferase (trmA family) (NCBI ptt file)||254, 341|
|CAC0550||CAC0550||Possible sigma factor (NCBI ptt file)||176, 253|
|CAC0691||CAC0691||Uncharacterized conserved protein, VanW of Enterococcus faecalis related (NCBI ptt file)||176, 253|
|CAC0729||CAC0729||Hypothetical protein (NCBI ptt file)||15, 254|
|CAC0773||CAC0773||ABC-type cobalt transport protein ATPase component (NCBI ptt file)||28, 253|
|CAC0875||CAC0875||Predicted permease (NCBI ptt file)||206, 253|
|CAC0883||CAC0883||Probable cation efflux pump (multidrug resistance protein) (NCBI ptt file)||84, 254|
|CAC0885||CAC0885||Ferredoxin 3 fused to uncharacterized domain, orthologous of AF0155 from Archaeoglobus fulgidus (NCBI ptt file)||214, 254|
|CAC0991||CAC0991||Putative intracellular protease (NCBI ptt file)||254, 258|
|CAC1048||CAC1048||Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily (NCBI ptt file)||4, 253|
|CAC1061||CAC1061||Uncharcterized protein, shares conserved domain among different RHS family proteins and WAPA of B.subtilis (NCBI ptt file)||183, 253|
|CAC1112||CAC1112||Hypothetical protein, CF-11 family (NCBI ptt file)||104, 253|
|CAC1117||CAC1117||Hypothetical protein (NCBI ptt file)||195, 253|
|CAC1119||CAC1119||Hypothetical protein (NCBI ptt file)||187, 253|
|CAC1174||CAC1174||Hypothetical protein (NCBI ptt file)||104, 253|
|CAC1175||CAC1175||Hypothetical protein, CF-35 family (NCBI ptt file)||104, 253|
|CAC1190||CAC1190||Predicted Fe-S-cluster redox enzyme, YLON B.subtilis homolog (NCBI ptt file)||187, 253|
|CAC1192||CAC1192||Phage replicative DNA helicase, YorI B.subtilis homolog (NCBI ptt file)||187, 253|
|CAC1193||CAC1193||Hypothetical protein (NCBI ptt file)||104, 253|
|CAC1194||CAC1194||Hypothetical protein (NCBI ptt file)||137, 253|
|CAC1209||nrdD||Anaerobic ribonucleotide reductase (NCBI ptt file)||187, 253|
|CAC1254||CAC1254||Fe-S oxidoreductase (NCBI ptt file)||237, 254|
|CAC1255||CAC1255||Uncharacterized conserved protein (NCBI ptt file)||84, 254|
|CAC1278||lepA||Membrane GTPase lepA (NCBI ptt file)||84, 254|
|CAC1354||CAC1354||Phosphotransferase system IIA component (NCBI ptt file)||254, 341|
|CAC1519||CAC1519||Predicted permease (NCBI ptt file)||253, 357|
|CAC2368||CAC2368||Hypothetical protein (NCBI ptt file)||254, 256|
|CAC2369||CAC2369||Hypothetical protein (NCBI ptt file)||253, 254|
|CAC2396||CAC2396||Predicted xylanase/chitin deacetylase (NCBI ptt file)||179, 253|
|CAC2648||CAC2648||Uncharacterized conserved membrane protein (NCBI ptt file)||237, 254|
|CAC2751||CAC2751||Predicted acetyltransferase (NCBI ptt file)||176, 253|
|CAC2769||ppiB||Peptidyl-prolyl cis-transisomerase, cyclophilin family (NCBI ptt file)||254, 281|
|CAC2892||ctrA||CTP synthase (UTP-ammonia lyase) (NCBI ptt file)||237, 254|
|CAC2982||CAC2982||MinD family ATPase (chromosome partitioning) (NCBI ptt file)||254, 341|
|CAC2989||CAC2989||PHP superfamily hydrolase, YABD ortholog (NCBI ptt file)||254, 256|
|CAC3098||rplM||Ribosomal protein L13 (NCBI ptt file)||237, 254|
|CAC3130||rplB||Ribosomal protein L2 (NCBI ptt file)||237, 254|
|CAC3133||rplC||Ribosomal protein L3 (NCBI ptt file)||254, 255|
|CAC3139||rpsG||Ribosomal protein S7 (NCBI ptt file)||237, 254|
|CAC3140||rpsL||Ribosomal protein S12 (NCBI ptt file)||237, 254|
|CAC3141||CAC3141||Ribosomal protein HS6-type (NCBI ptt file)||237, 254|
|CAC3414||CAC3414||ABC-type multidrug/protein/lipid transport system, ATPase component (NCBI ptt file)||176, 253|
|CAC3437||CAC3437||Predicted membrane-associated Zn-dependent protease, HtpX family (BlaR subfamily) (NCBI ptt file)||59, 253|
|CAC3593||purA||Adenylosuccinate synthase (NCBI ptt file)||172, 254|
|CAC3732||gidB||Glucose-inhibited division protein, GIDB (S-adenosylmethionine-dependent methyltransferase) (NCBI ptt file)||160, 254|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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