Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2461(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2461
|Gene||Common Name||Description||Module membership|
|CAC0037||CAC0037||MinD family ATPase from ParA/SOJ subfamily (NCBI ptt file)||264, 353|
|CAC0041||CAC0041||Uncharacterized small conserved protein, homolog of yfjA/yukE B.subtilis (NCBI ptt file)||208, 264|
|CAC0044||CAC0044||Predicted membrane protein (NCBI ptt file)||264, 312|
|CAC0045||CAC0045||TPR-repeat-containing protein (NCBI ptt file)||102, 264|
|CAC0046||CAC0046||Hypothetical protein, CF-2 family (NCBI ptt file)||264, 366|
|CAC0048||CAC0048||Hypothetical protein, CF-17 family (NCBI ptt file)||264, 333|
|CAC0049||CAC0049||Hypothetical protein, CF-17 family (NCBI ptt file)||242, 264|
|CAC0073||CAC0073||Uncharacterized protein, ortholog of YYBG B.subtilis (NCBI ptt file)||264, 324|
|CAC0207||CAC0207||Hypothetical protein, CF-6 family (NCBI ptt file)||63, 273|
|CAC0399||CAC0399||Hypothetical protein, CF-24 family (NCBI ptt file)||258, 264|
|CAC0404||CAC0404||Serine/threonine protein kinase fused to TPR repeats domain (NCBI ptt file)||242, 264|
|CAC0405||CAC0405||Hypothetical protein (NCBI ptt file)||242, 264|
|CAC0406||CAC0406||Predicted membrane protein, containing FHA domain (NCBI ptt file)||242, 264|
|CAC0410||CAC0410||Uncharacterized small conserved protein, homolog of YUKE/YFJA (NCBI ptt file)||258, 264|
|CAC0411||CAC0411||Uncharacterized small conserved protein, homolog of YUKE/YFJA (NCBI ptt file)||242, 264|
|CAC0412||CAC0412||TPR-repeat-containing protein (NCBI ptt file)||242, 264|
|CAC0540||CAC0540||Beta-mannanase ManB-like enzyme, contains ChW-repeats (NCBI ptt file)||264, 324|
|CAC0672||CAC0672||Fision threonyl-tRNA synthetase (N-terminal part) and uridine kinase (NCBI ptt file)||64, 273|
|CAC0673||CAC0673||L-serine dehydratase, beta chain (NCBI ptt file)||64, 273|
|CAC0947||CAC0947||Predicted membrane protein, hemolysin III homolog (NCBI ptt file)||38, 273|
|CAC1488||CAC1488||Glycosyltransferase involved in cell wall biogenesis (NCBI ptt file)||63, 273|
|CAC1656||CAC1656||Hypothetical protein, CF-39 family (NCBI ptt file)||114, 273|
|CAC1835||miaA||TRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file)||159, 273|
|CAC2038||CAC2038||Hypothetical protein, CF-23 family (NCBI ptt file)||273, 312|
|CAC2072||CAC2072||Stage IV sporulation protein B, SpoIVB (NCBI ptt file)||63, 273|
|CAC2085||CAC2085||Uncharacterized protein from alkaline shock protein family, YQHY B.subtilis ortholog (NCBI ptt file)||64, 273|
|CAC2141||CAC2141||Hypothetical protein (NCBI ptt file)||57, 273|
|CAC2230||CAC2230||Uncharacterized protein of PR1 family, YkwD B.subtilis ortholog (NCBI ptt file)||63, 273|
|CAC2422||CAC2422||Oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase (NCBI ptt file)||273, 298|
|CAC2454||CAC2454||Hypothetical protein, CF-13 family (NCBI ptt file)||190, 264|
|CAC2456||CAC2456||Hypothetical protein, CF-40 family (NCBI ptt file)||242, 264|
|CAC2457||CAC2457||Hypothetical protein (NCBI ptt file)||242, 264|
|CAC2461||CAC2461||Hypothetical protein, CF-13 family (NCBI ptt file)||264, 273|
|CAC2462||CAC2462||Hypothetical protein, CF-13 family (NCBI ptt file)||264, 273|
|CAC2631||CAC2631||Uncharacterized protein, ErfK family (NCBI ptt file)||159, 273|
|CAC2706||CAC2706||Uncharacterized conserved membrane protein, DedA family (NCBI ptt file)||53, 273|
|CAC2826||CAC2826||Intracellular protease/amidase related enzyme (ThiJ family) (NCBI ptt file)||86, 273|
|CAC2974||CAC2974||Predicted protease from collagenase family (NCBI ptt file)||210, 273|
|CAC2987||CAC2987||Primase-like protein, containing TOPRIM domain, YABF B.subtilis ortholog (NCBI ptt file)||57, 273|
|CAC3186||CAC3186||Hypothetical protein (NCBI ptt file)||95, 273|
|CAC3202||ftsH||ATP-dependent Zn protease, FTSH (NCBI ptt file)||273, 292|
|CAC3234||CAC3234||Uncharacterized conserved protein, YVBJ B.subtilis ortholog with N-terminal C4-type Zn-finger domain (NCBI ptt file)||264, 338|
|CAC3235||CAC3235||Uncharacterized conserved protein, YVBJ B.subtilis homolog (NCBI ptt file)||264, 338|
|CAC3259||CAC3259||Predicted membrane protein; CF_1 family (NCBI ptt file)||264, 338|
|CAC3661||CAC3661||Glycosyltransferase (NCBI ptt file)||210, 273|
|CAC3720||CAC3720||Hypothetical protein (NCBI ptt file)||273, 298|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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