Organism : Clostridium acetobutylicum | Module List :
Ethanolamine ammonia lyase large subunit (NCBI ptt file)
Functional Annotations (4)
|Ethanolamine ammonia-lyase, large subunit||cog/ cog|
|cellular amino acid metabolic process||go/ biological_process|
|ethanolamine ammonia-lyase activity||go/ molecular_function|
|ethanolamine ammonia-lyase complex||go/ cellular_component|
Regulation information for CAC2718(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC2718
Module neighborhood information for CAC2718
|Gene||Common Name||Description||Module membership|
|CAC0341||CAC0341||Predicted membrane protein (NCBI ptt file)||111, 144|
|CAC0342||CAC0342||Hypothetical protein (NCBI ptt file)||111, 144|
|CAC0376||CAC0376||N-dimethylarginine dimethylaminohydrolase (similar to ykgA B.subtilis) (NCBI ptt file)||111, 256|
|CAC0395||kdgK||2-keto-3-deoxygluconate kinase (gene kdgK) (NCBI ptt file)||43, 65|
|CAC0424||CAC0424||Fructokinase (NCBI ptt file)||43, 284|
|CAC0426||CAC0426||Transcriptional regulator (HTH_ARAC-domain) (NCBI ptt file)||43, 343|
|CAC0453||CAC0453||ABC-transporter, ATP-binding protein (NCBI ptt file)||111, 144|
|CAC0532||CAC0532||PTS system, arbutin-like IIBC component (NCBI ptt file)||43, 284|
|CAC0561||CAC0561||Cellulase CelE ortholog; dockerin domain (NCBI ptt file)||43, 265|
|CAC0911||CAC0911||Possible processive endoglucanase family 48, secreted; CelF ortholog; dockerin domain (NCBI ptt file)||111, 148|
|CAC0912||CAC0912||Possible non-processive endoglucanase family 5, secreted; CelA homolog secreted; dockerin domain (NCBI ptt file)||53, 111|
|CAC0914||CAC0914||Cellulosome integrating cohesin-containing protein, secreted (NCBI ptt file)||111, 161|
|CAC0916||CAC0916||Possible non-processive endoglucanase family 9, secreted; CelG ortholog; dockerin and cellulose-binding domain (NCBI ptt file)||111, 161|
|CAC0917||CAC0917||and cellulose-binding endoglucanase family 9; CelL ortholog; dockerin domain (NCBI ptt file)||111, 161|
|CAC0918||CAC0918||Possible non-processive endoglucanase family 5, ortholog of mannase A, secreted; dockerin domain (NCBI ptt file)||111, 161|
|CAC1008||CAC1008||Hypothetical protein, CF-30 family (NCBI ptt file)||43, 343|
|CAC1427||gabT||4-aminobutyrate aminotransferase (PLP-dependent) (NCBI ptt file)||111, 256|
|CAC1515||asrC||Anaerobic sulfite reduction protein C, reductase (NCBI ptt file)||111, 240|
|CAC1518||CAC1518||ABC-type transport system, ATPase component (NCBI ptt file)||111, 343|
|CAC1644||CAC1644||Hypothetical protein, CF-7 family (NCBI ptt file)||111, 337|
|CAC1709||phoU||Phosphate uptake regulator (NCBI ptt file)||103, 111|
|CAC1774||sacB2||Levansucrase (NCBI ptt file)||111, 161|
|CAC2267||CAC2267||Hypothetical protein (NCBI ptt file)||111, 123|
|CAC2718||CAC2718||Ethanolamine ammonia lyase large subunit (NCBI ptt file)||43, 111|
|CAC2719||CAC2719||Ethanolamin permease (NCBI ptt file)||111, 312|
|CAC3506||CAC3506||Predicted MDR-type permease (NCBI ptt file)||43, 125|
|CAC3515||CAC3515||Alpha/beta superfamily hydrolase (possible peptidase) (NCBI ptt file)||43, 230|
|CAC3643||CAC3643||Oligopeptide ABC transporter, permease component (NCBI ptt file)||43, 217|
|CAC3702||CAC3702||Hypothetical protein, CF-7 family (NCBI ptt file)||43, 343|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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