Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2812(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2812
|Gene||Common Name||Description||Module membership|
|CAC0071||CAC0071||Uncharacterized conserved protein, YTFE E.coli ortholog (NCBI ptt file)||24, 108|
|CAC0185||CAC0185||Uncharacterized membrane protein, YBBC B.subtilis ortholog (NCBI ptt file)||115, 314|
|CAC0202||CAC0202||Hydrolase of the alpha/beta superfamily (NCBI ptt file)||24, 288|
|CAC0203||CAC0203||Flavodoxin (NCBI ptt file)||24, 288|
|CAC0204||srta||Sortase (surface protein transpeptidase), YHCS B.subtilis ortholog (NCBI ptt file)||115, 207|
|CAC0326||CAC0326||ATPase related to the helicase subunit of Holliday junction resolvase (NCBI ptt file)||24, 89|
|CAC0352||CAC0352||Uncharacterized conserved membrane protein, SANA family (NCBI ptt file)||115, 345|
|CAC0576||CAC0576||Hypothetical protein (NCBI ptt file)||115, 183|
|CAC0597||gerKB||Spore germination protein, gerKB (NCBI ptt file)||115, 185|
|CAC0598||gerKC||Spore germination protein, gerKC (NCBI ptt file)||24, 145|
|CAC0625||CAC0625||Possible periplasmic aspartyl protease (NCBI ptt file)||24, 266|
|CAC0741||CAC0741||Methyl-accepting chemotaxis protein (NCBI ptt file)||24, 285|
|CAC0805||CAC0805||Methyl-accepting chemotaxis protein (NCBI ptt file)||24, 207|
|CAC0830||CAC0830||Response regulator (NCBI ptt file)||67, 115|
|CAC0833||CAC0833||ABC-type multidrug transport system (daunorubicin resistance), ATPase component (NCBI ptt file)||115, 207|
|CAC0834||CAC0834||Predicted integral membrane protein (NCBI ptt file)||75, 115|
|CAC0835||CAC0835||Predicted integral membrane protein (NCBI ptt file)||115, 207|
|CAC0852||CAC0852||Amino acid permease (NCBI ptt file)||115, 317|
|CAC0921||CAC0921||Metal-dependent amidohydrolase (NCBI ptt file)||24, 108|
|CAC1351||CAC1351||Periplasmic sugar-binding protein (NCBI ptt file)||24, 267|
|CAC1439||CAC1439||Uncharacterized conserved protein (NCBI ptt file)||115, 158|
|CAC1440||CAC1440||Hypothetical protein (NCBI ptt file)||115, 158|
|CAC1591||CAC1591||Uncharacterized membrane protein, YCGQ B. subtilis homolog (NCBI ptt file)||113, 115|
|CAC1643||CAC1643||Hypothetical protein, CF-38 family (NCBI ptt file)||115, 140|
|CAC2403||CAC2403||Predicted membrane protein (NCBI ptt file)||68, 115|
|CAC2528||CAC2528||Multimeric flavodoxin WrbA fused to cytochrome c-like domain (NCBI ptt file)||7, 24|
|CAC2592||CAC2592||6-pyruvoyl-tetrahydropterin synthase related domain; conserved membrane protein (NCBI ptt file)||24, 240|
|CAC2662||CAC2662||Hypothetical protein (NCBI ptt file)||60, 115|
|CAC2812||CAC2812||Hypothetical protein (NCBI ptt file)||24, 115|
|CAC2898||spoIIR||Stage II sporulation protein R (NCBI ptt file)||24, 179|
|CAC2919||CAC2919||Hypothetical protein (NCBI ptt file)||24, 73|
|CAC3011||CAC3011||Predicted membrane protein (NCBI ptt file)||65, 115|
|CAC3301||gerKB||Spore germination protein GerKB, membrane protein (NCBI ptt file)||24, 240|
|CAC3324||CAC3324||Predicted transcriptional regulator (NCBI ptt file)||24, 227|
|CAC3329||CAC3329||Putative Mn transporter, NRAMP family (NCBI ptt file)||24, 40|
|CAC3331||CAC3331||Alanine racemase (NCBI ptt file)||24, 353|
|CAC3351||CAC3351||Uncharacterized membrane protein, YCBP B.subtilis ortholog (NCBI ptt file)||1, 115|
|CAC3465||CAC3465||Amidase from nicotinamidase family (NCBI ptt file)||115, 283|
|CAC3466||CAC3466||Transcriptional regulator, LysR family (NCBI ptt file)||115, 283|
|CAC3467||CAC3467||Uncharacterized conserved protein, phnB family (NCBI ptt file)||115, 283|
|CAC3610||CAC3610||ABC-type MDR transport system, permease component (NCBI ptt file)||24, 150|
|CAC3613||CAC3613||Hypothetical protein (NCBI ptt file)||115, 293|
|CAC3614||CAC3614||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3615||CAC3615||Uncharacterized conserved membrane protein, possible permease (NCBI ptt file)||115, 158|
|CAC3616||CAC3616||ABC transport system, ATPase component (NCBI ptt file)||115, 158|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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